Non-Coding RNA Search

Ss1.1-Pig4-TMW8012H24.5

Sequence:


               
               GCGGCGGCGGCGGGAGCAGCAAAGGGGCGGCAGGGATCCTCGGGGCTGGCGGCTGGGAAG
GCGTGGTAGACCCGGTGTGTGGCGCGCCCGGAGCCCCGCGTTTCAGCCCGAGGGAAGGAA
GCCAGTTGAGGGAAATTCTCCATGAATGTACGTCACAATGATGATGACCGACCAAATCCC
TCTGGAACTGCCGCCGTTGCTGAATGGAGAGGTAGCCATGATGCCTCACCTGGTGAATGG
AGATGCAGCTCAGCAGGTTATTCTCGTTCAAGTTAATCCAGGTGAGACTTTTACAATAAG
AGCGGAGGATGGAACACTGCAGTGTATCCAAGGGCCTGCTGAAGTTCCCATGATGTCACC
CAATGGATCCATTCCTCCCATCCATGTGCCTCCAGGTTATATTTCACAGGTGATTGAAGA
CAATACTGGAGTCCGCCGGGTGGTGGTCACACCCCAGTCTCCTGAGTGTTACCCCCCAAG
CTACCCCTCGGCCATGTCTCCAACCCATCACCTACCCCCCTACCTGACTCACCACCCGCA
TTTTATTCATAACTCACACACAGCTTACTACCCGCCTGTTACTGGACCTGGAGATATGCC
ACCTCAGTTTTTTCCTCAGCATCATCTTCCCCCTACAATATATGGCGAGCAAGAAATTAT
ACCACTCTATGGAATGTCGAGTTATATCACCCGAGAAGACCAGTACAGCAAGCCTCCGCA
CAAAAAACTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGCGGCGGGAGCAGCAAAGGGGCGGCAGGGATCCTCGGGGCTGGCGGCTGGGAAG
GCGTGGTAGACCCGGTGTGTGGCGCGCCCGGAGCCCCGCGTTTCAGCCCGAGGGAAGGAA
GCCAGTTGAGGGAAATTCTCCATGAATGTACGTCACAATGATGATGACCGACCAAATCCC
TCTGGAACTGCCGCCGTTGCTGAATGGAGAGGTAGCCATGATGCCTCACCTGGTGAATGG
AGATGCAGCTCAGCAGGTTATTCTCGTTCAAGTTAATCCAGGTGAGACTTTTACAATAAG
AGCGGAGGATGGAACACTGCAGTGTATCCAAGGGCCTGCTGAAGTTCCCATGATGTCACC
CAATGGATCCATTCCTCCCATCCATGTGCCTCCAGGTTATATTTCACAGGTGATTGAAGA
CAATACTGGAGTCCGCCGGGTGGTGGTCACACCCCAGTCTCCTGAGTGTTACCCCCCAAG
CTACCCCTCGGCCATGTCTCCAACCCATCACCTACCCCCCTACCTGACTCACCACCCGCA
TTTTATTCATAACTCACACACAGCTTACTACCCGCCTGTTACTGGACCTGGAGATATGCC
ACCTCAGTTTTTTCCTCAGCATCATCTTCCCCCTACAATATATGGCGAGCAAGAAATTAT
ACCACTCTATGGAATGTCGAGTTATATCACCCGAGAAGACCAGTACAGCAAGCCTCCGCA
CAAAAAACTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96D78_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96D78_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-554, - strand, RNAz p=0.981244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-554, - strand, RNAz p=0.981244

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               116-258, gnl|bosTau2|chr1 (64399838-64399696)
               

               
               116-258, gnl|Hg17|chr3 (173312942-173313084)
               

               
               116-258, gnl|Mm7|chr3 (27458800-27458658)
               


               
               396-653, gnl|bosTau2|chr1 (64248866-64248609)
               

               
               396-653, gnl|Hg17|chr3 (173448011-173448268)
               

               
               396-653, gnl|Mm7|chr3 (27357897-27357640)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-258, gnl|bosTau2|chr1 (64399838-64399696)
               

               
               116-258, gnl|Hg17|chr3 (173312942-173313084)
               

               
               116-258, gnl|Mm7|chr3 (27458800-27458658)
               


               
               396-653, gnl|bosTau2|chr1 (64248866-64248609)
               

               
               396-653, gnl|Hg17|chr3 (173448011-173448268)
               

               
               396-653, gnl|Mm7|chr3 (27357897-27357640)

	116-258, gnl\|bosTau2\|chr1 (64399838-64399696)
	116-258, gnl\|Hg17\|chr3 (173312942-173313084)
	116-258, gnl\|Mm7\|chr3 (27458800-27458658)

	396-653, gnl\|bosTau2\|chr1 (64248866-64248609)
	396-653, gnl\|Hg17\|chr3 (173448011-173448268)
	396-653, gnl\|Mm7\|chr3 (27357897-27357640)