Ss1.1-Pig4-TMW8012K02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTCTTGACAGAGAAGCGGATCGAGGCTCTGAGAGGGAAGCGTCGGTGGCGGCACTCGA TCTGGGGAGAATCTTCTGCTGACTCACCTTTTCCTGGAAAAATGGACCATTCTGCCCACA TGGGGATGAGCACCCACATGGGGATGAGCGATATGAACCACAGTACTACCATGCCACCTT CTCATCATCACCCAACCTCTTCAGGCTCCCATGAGTCCATGATGATGCCTATGACCTTCT ACTTTGGCTTTAAGAAGGTGGAAGTATTGTTTGCTGGTTTGGTGATTAATACAGCTGGAG AAATGGCTGGAGCTTTTGTGGCGGTGTTTTTACTAGCCATGTTCTATGAAGGACTCAAGA TAGCCCGAGAGGGCCTCCTGCGCAAATCACAAGTCAGCATTCGGTACAATTCCATGCCTG TCCCTGGACCAAATGGAACTATCCTTATGGAGACACACAAAACAGTTGGGCAGCAGATGC TGAGTTTTCCTCACCTCCTGCAGACAGTGCTGCATATCATCCAGGTGGTCATCAGCTACT TCCTCATGCTCATCTTCATGACCTACAACGGGTACCTGTGCATCGCGGTAGCCGCAGGGG CCGGCACAGGGTACTTTCTCTTCAGCTGGAAGAAGGCAGTGGTCGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTCTTGACAGAGAAGCGGATCGAGGCTCTGAGAGGGAAGCGTCGGTGGCGGCACTCGA TCTGGGGAGAATCTTCTGCTGACTCACCTTTTCCTGGAAAAATGGACCATTCTGCCCACA TGGGGATGAGCACCCACATGGGGATGAGCGATATGAACCACAGTACTACCATGCCACCTT CTCATCATCACCCAACCTCTTCAGGCTCCCATGAGTCCATGATGATGCCTATGACCTTCT ACTTTGGCTTTAAGAAGGTGGAAGTATTGTTTGCTGGTTTGGTGATTAATACAGCTGGAG AAATGGCTGGAGCTTTTGTGGCGGTGTTTTTACTAGCCATGTTCTATGAAGGACTCAAGA TAGCCCGAGAGGGCCTCCTGCGCAAATCACAAGTCAGCATTCGGTACAATTCCATGCCTG TCCCTGGACCAAATGGAACTATCCTTATGGAGACACACAAAACAGTTGGGCAGCAGATGC TGAGTTTTCCTCACCTCCTGCAGACAGTGCTGCATATCATCCAGGTGGTCATCAGCTACT TCCTCATGCTCATCTTCATGACCTACAACGGGTACCTGTGCATCGCGGTAGCCGCAGGGG CCGGCACAGGGTACTTTCTCTTCAGCTGGAAGAAGGCAGTGGTCGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 362-478, - strand, RNAz p=0.642521 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 362-478, - strand, RNAz p=0.642521 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 299-478, gnl|bosTau2|chr8 (53012530-53012350) | |
| 299-478, gnl|canFam2|chr11 (70653405-70653236) | |
| 299-478, gnl|canFam2|chr11 (70653234-70653350) | |
| 299-478, gnl|canFam2|chr11 (70653234-70653439) | |
| 299-478, gnl|danRer3|chr5 (63979846-63979675) | |
| 299-478, gnl|danRer3|chr5 (63979675-63979850) | |
| 299-478, gnl|dasNov1|scaffold_11762 (13820-13935) | |
| 299-478, gnl|dasNov1|scaffold_31803 (8728-8559) | |
| 299-478, gnl|dasNov1|scaffold_31803 (8557-8757) | |
| 299-478, gnl|echTel1|scaffold_308485 (36427-36312) | |
| 299-478, gnl|echTel1|scaffold_324763 (70086-70253) | |
| 299-478, gnl|echTel1|scaffold_324763 (70255-70050) | |
| 299-478, gnl|fr1|chrUn (257570736-257570565) | |
| 299-478, gnl|fr1|chrUn (257570565-257570766) | |
| 299-478, gnl|galGal2|chr17 (9398111-9397941) | |
| 299-478, gnl|galGal2|chr17 (9397940-9398117) | |
| 299-478, gnl|hg17|chr12 (95168731-95168841) | |
| 299-478, gnl|hg17|chr3 (173804125-173804294) | |
| 299-478, gnl|hg17|chr9 (113100527-113100729) | |
| 299-478, gnl|Hg17|chr9 (113100526-113100704) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20004-20175) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20175-20057) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20175-20002) | |
| 299-478, gnl|mm7|chr10 (92803285-92803215) | |
| 299-478, gnl|mm7|chr4 (61821731-61821562) | |
| 299-478, gnl|mm7|chr4 (61821562-61821767) | |
| 299-478, gnl|Mm7|chr4 (61821561-61821741) | |
| 299-478, gnl|monDom2|scaffold_51 (1601721-1601891) | |
| 299-478, gnl|monDom2|scaffold_51 (1601892-1601669) | |
| 299-478, gnl|oryCun1|scaffold_204907 (89926-89757) | |
| 299-478, gnl|oryCun1|scaffold_204907 (89757-89962) | |
| 299-478, gnl|oryCun1|scaffold_208138 (15245-15144) | |
| 299-478, gnl|panTro1|chr10 (97502352-97502462) | |
| 299-478, gnl|panTro1|chr11 (97634406-97634608) | |
| 299-478, gnl|panTro1|chr2 (177337837-177338006) | |
| 299-478, gnl|rheMac2|chr11 (97490002-97490112) | |
| 299-478, gnl|rheMac2|chr15 (22857399-22857197) | |
| 299-478, gnl|rheMac2|chr2 (114399360-114399184) | |
| 299-478, gnl|rn3|chr5 (79389526-79389359) | |
| 299-478, gnl|rn3|chr5 (79389357-79389559) | |
| 299-478, gnl|rn3|chr7 (30296759-30296685) | |
| 299-478, gnl|tetNig1|chr4 (511243-511072) | |
| 299-478, gnl|tetNig1|chr4 (511072-511246) | |
| 299-478, gnl|xenTro1|scaffold_302 (681874-682045) | |
| 299-478, gnl|xenTro1|scaffold_302 (682045-681870) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 299-478, gnl|bosTau2|chr8 (53012530-53012350) | |
| 299-478, gnl|canFam2|chr11 (70653405-70653236) | |
| 299-478, gnl|canFam2|chr11 (70653234-70653350) | |
| 299-478, gnl|canFam2|chr11 (70653234-70653439) | |
| 299-478, gnl|danRer3|chr5 (63979846-63979675) | |
| 299-478, gnl|danRer3|chr5 (63979675-63979850) | |
| 299-478, gnl|dasNov1|scaffold_11762 (13820-13935) | |
| 299-478, gnl|dasNov1|scaffold_31803 (8728-8559) | |
| 299-478, gnl|dasNov1|scaffold_31803 (8557-8757) | |
| 299-478, gnl|echTel1|scaffold_308485 (36427-36312) | |
| 299-478, gnl|echTel1|scaffold_324763 (70086-70253) | |
| 299-478, gnl|echTel1|scaffold_324763 (70255-70050) | |
| 299-478, gnl|fr1|chrUn (257570736-257570565) | |
| 299-478, gnl|fr1|chrUn (257570565-257570766) | |
| 299-478, gnl|galGal2|chr17 (9398111-9397941) | |
| 299-478, gnl|galGal2|chr17 (9397940-9398117) | |
| 299-478, gnl|hg17|chr12 (95168731-95168841) | |
| 299-478, gnl|hg17|chr3 (173804125-173804294) | |
| 299-478, gnl|hg17|chr9 (113100527-113100729) | |
| 299-478, gnl|Hg17|chr9 (113100526-113100704) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20004-20175) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20175-20057) | |
| 299-478, gnl|loxAfr1|scaffold_31121 (20175-20002) | |
| 299-478, gnl|mm7|chr10 (92803285-92803215) | |
| 299-478, gnl|mm7|chr4 (61821731-61821562) | |
| 299-478, gnl|mm7|chr4 (61821562-61821767) | |
| 299-478, gnl|Mm7|chr4 (61821561-61821741) | |
| 299-478, gnl|monDom2|scaffold_51 (1601721-1601891) | |
| 299-478, gnl|monDom2|scaffold_51 (1601892-1601669) | |
| 299-478, gnl|oryCun1|scaffold_204907 (89926-89757) | |
| 299-478, gnl|oryCun1|scaffold_204907 (89757-89962) | |
| 299-478, gnl|oryCun1|scaffold_208138 (15245-15144) | |
| 299-478, gnl|panTro1|chr10 (97502352-97502462) | |
| 299-478, gnl|panTro1|chr11 (97634406-97634608) | |
| 299-478, gnl|panTro1|chr2 (177337837-177338006) | |
| 299-478, gnl|rheMac2|chr11 (97490002-97490112) | |
| 299-478, gnl|rheMac2|chr15 (22857399-22857197) | |
| 299-478, gnl|rheMac2|chr2 (114399360-114399184) | |
| 299-478, gnl|rn3|chr5 (79389526-79389359) | |
| 299-478, gnl|rn3|chr5 (79389357-79389559) | |
| 299-478, gnl|rn3|chr7 (30296759-30296685) | |
| 299-478, gnl|tetNig1|chr4 (511243-511072) | |
| 299-478, gnl|tetNig1|chr4 (511072-511246) | |
| 299-478, gnl|xenTro1|scaffold_302 (681874-682045) | |
| 299-478, gnl|xenTro1|scaffold_302 (682045-681870) |