Ss1.1-Pig4-TMW8012M11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTTTGTTGGGCACCGGAAAGCTGTGACGGTCGTGAAATTCAACCCAAAAATCTTCAA GAAGAAACAGAAGAATGGGAGCTCTGCAAAGCCTAGCTGCCCATACTGCTGCTGTGCTGT TGGCAGCAAGGATCGCTCGCTGTCTGTCTGGCTCACGTGTCTGAAGCGGCCGTTGGTTGT TATCCATGAGCTATTTGACAAATCCATTATGGACATTTCTTGGACGCTGAACGGGCTGGG CATCCTGGTATGCTCCATGGACGGGTCTGTGGCGTTCCTCGATTTCTCCCAGGACGAGCT CGGGGACCCCCTGAGTGAGGAGGAGAAGAGCCGCATTCACCAGTCCACCTATGGCAAGAG CTTGGCCATCATGACTGAAGCCCAACTGTCTACTGCTGTCATTGAGAACCCCGAGATGCT TAAGTACCAGCGACGGCAACAGCAGCAGCAGCTGGACCAGAAGAGTACCACGGCCAAAAA GACAGGCTCCACTGCCTCAGTTGCTGGCGTTGTCAATGGGGAGAGTCTGGAGGATATCAG GAAGAATCTTCTAAAGAAACAAGTGGAGACTCGGACAGCGGATGGCCGGAGGAGAATCAC ACCACTCTGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTTTGTTGGGCACCGGAAAGCTGTGACGGTCGTGAAATTCAACCCAAAAATCTTCAA GAAGAAACAGAAGAATGGGAGCTCTGCAAAGCCTAGCTGCCCATACTGCTGCTGTGCTGT TGGCAGCAAGGATCGCTCGCTGTCTGTCTGGCTCACGTGTCTGAAGCGGCCGTTGGTTGT TATCCATGAGCTATTTGACAAATCCATTATGGACATTTCTTGGACGCTGAACGGGCTGGG CATCCTGGTATGCTCCATGGACGGGTCTGTGGCGTTCCTCGATTTCTCCCAGGACGAGCT CGGGGACCCCCTGAGTGAGGAGGAGAAGAGCCGCATTCACCAGTCCACCTATGGCAAGAG CTTGGCCATCATGACTGAAGCCCAACTGTCTACTGCTGTCATTGAGAACCCCGAGATGCT TAAGTACCAGCGACGGCAACAGCAGCAGCAGCTGGACCAGAAGAGTACCACGGCCAAAAA GACAGGCTCCACTGCCTCAGTTGCTGGCGTTGTCAATGGGGAGAGTCTGGAGGATATCAG GAAGAATCTTCTAAAGAAACAAGTGGAGACTCGGACAGCGGATGGCCGGAGGAGAATCAC ACCACTCTGCAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 37-151, + strand, RNAz p=0.836934 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 37-151, + strand, RNAz p=0.836934 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 37-151, gnl|bosTau2|chr17 (43836599-43836485) | |
| 37-151, gnl|canFam2|chr26 (32881381-32881228) | |
| 37-151, gnl|danRer3|chr7 (25486225-25486086) | |
| 37-151, gnl|echTel1|scaffold_166499 (2761-2874) | |
| 37-151, gnl|fr1|chrUn (61067481-61067636) | |
| 37-151, gnl|galGal2|chr15 (633748-633899) | |
| 37-151, gnl|hg17|chr22 (17754172-17754326) | |
| 37-151, gnl|Hg17|chr22 (17754292-17754178) | |
| 37-151, gnl|loxAfr1|scaffold_30584 (16234-16387) | |
| 37-151, gnl|mm7|chr16 (18468830-18468677) | |
| 37-151, gnl|Mm7|chr16_random (3121254-3121140) | |
| 37-151, gnl|monDom2|scaffold_141 (1977004-1977160) | |
| 37-151, gnl|oryCun1|scaffold_196961 (3885-4037) | |
| 37-151, gnl|panTro1|chr23 (17728860-17729014) | |
| 37-151, gnl|rheMac2|chr10 (63434049-63434203) | |
| 37-151, gnl|rn3|chr11_random (1102752-1102905) | |
| 37-151, gnl|tetNig1|chr12 (10222696-10222564) | |
| 37-151, gnl|xenTro1|scaffold_118 (356330-356483) | |
| 327-544, gnl|bosTau2|chr17 (43833003-43832771) | |
| 327-544, gnl|canFam2|chr26 (32885955-32885726) | |
| 327-544, gnl|danRer3|chr7 (25490151-25489927) | |
| 327-544, gnl|dasNov1|scaffold_114489 (9170-8914) | |
| 327-544, gnl|echTel1|scaffold_281383 (14451-14229) | |
| 327-544, gnl|fr1|chrUn (61066085-61066313) | |
| 327-544, gnl|galGal2|chr15 (628648-628889) | |
| 327-544, gnl|hg17|chr22 (17747588-17747817) | |
| 327-544, gnl|Hg17|chr22 (17747815-17747598) | |
| 327-544, gnl|loxAfr1|scaffold_30584 (6375-6595) | |
| 327-544, gnl|mm7|chr16 (18475608-18475379) | |
| 327-544, gnl|Mm7|chr16_random (3114584-3114367) | |
| 327-544, gnl|monDom2|scaffold_141 (1972917-1973141) | |
| 327-544, gnl|panTro1|chr23 (17722284-17722513) | |
| 327-544, gnl|rheMac2|chr10 (63427521-63427753) | |
| 327-544, gnl|rn3|chr11_random (1094520-1094749) | |
| 327-544, gnl|tetNig1|chr12 (10223390-10223156) | |
| 327-544, gnl|xenTro1|scaffold_118 (353867-354091) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-151, gnl|bosTau2|chr17 (43836599-43836485) | |
| 37-151, gnl|canFam2|chr26 (32881381-32881228) | |
| 37-151, gnl|danRer3|chr7 (25486225-25486086) | |
| 37-151, gnl|echTel1|scaffold_166499 (2761-2874) | |
| 37-151, gnl|fr1|chrUn (61067481-61067636) | |
| 37-151, gnl|galGal2|chr15 (633748-633899) | |
| 37-151, gnl|hg17|chr22 (17754172-17754326) | |
| 37-151, gnl|Hg17|chr22 (17754292-17754178) | |
| 37-151, gnl|loxAfr1|scaffold_30584 (16234-16387) | |
| 37-151, gnl|mm7|chr16 (18468830-18468677) | |
| 37-151, gnl|Mm7|chr16_random (3121254-3121140) | |
| 37-151, gnl|monDom2|scaffold_141 (1977004-1977160) | |
| 37-151, gnl|oryCun1|scaffold_196961 (3885-4037) | |
| 37-151, gnl|panTro1|chr23 (17728860-17729014) | |
| 37-151, gnl|rheMac2|chr10 (63434049-63434203) | |
| 37-151, gnl|rn3|chr11_random (1102752-1102905) | |
| 37-151, gnl|tetNig1|chr12 (10222696-10222564) | |
| 37-151, gnl|xenTro1|scaffold_118 (356330-356483) | |
| 327-544, gnl|bosTau2|chr17 (43833003-43832771) | |
| 327-544, gnl|canFam2|chr26 (32885955-32885726) | |
| 327-544, gnl|danRer3|chr7 (25490151-25489927) | |
| 327-544, gnl|dasNov1|scaffold_114489 (9170-8914) | |
| 327-544, gnl|echTel1|scaffold_281383 (14451-14229) | |
| 327-544, gnl|fr1|chrUn (61066085-61066313) | |
| 327-544, gnl|galGal2|chr15 (628648-628889) | |
| 327-544, gnl|hg17|chr22 (17747588-17747817) | |
| 327-544, gnl|Hg17|chr22 (17747815-17747598) | |
| 327-544, gnl|loxAfr1|scaffold_30584 (6375-6595) | |
| 327-544, gnl|mm7|chr16 (18475608-18475379) | |
| 327-544, gnl|Mm7|chr16_random (3114584-3114367) | |
| 327-544, gnl|monDom2|scaffold_141 (1972917-1973141) | |
| 327-544, gnl|panTro1|chr23 (17722284-17722513) | |
| 327-544, gnl|rheMac2|chr10 (63427521-63427753) | |
| 327-544, gnl|rn3|chr11_random (1094520-1094749) | |
| 327-544, gnl|tetNig1|chr12 (10223390-10223156) | |
| 327-544, gnl|xenTro1|scaffold_118 (353867-354091) |