Non-Coding RNA Search

Ss1.1-Pig4-TMW8013D22.3

Sequence:


               
               AAGCAGAAGAAGCTCATAAAATATTTGAAGGTCTTGGCCCAAAAGTTGAACTGCCGCTCT
ACAACCAGCCGTCAGATACCAAGGTGTACCACGAGAACATCAAGACTGGAGTACCTGCAA
GGCGCATGATGAAGTAAGATAATGAAGCTTTTTCATTTAAGACTAGTGATGACACCGTCC
CCACCAAGCCACATCTGCCATTGCAAAGTAGAAGTGCCACGGATCATTTTATCATTATTC
AAAATCCTATTCTAGGGAAATCCCTTCCATGACTCTTGCTAATGACGGTATTTGTAGATC
CTTCTGCCATTTCATGTCCTGGTGCCTTGGAAGTGCTCAGCCACCTCCTGTGGGTGTGGA
GGCTGCTCCAGAATGTAGTCTGCTTAGCCTTGCTCATCCCAGACACCAGGCCTTTATGGA
ATAAGAAATAAGTGGAAAGAAAACCTAATTTCTTGATCTGATTGAAAGTAAGAGAGGAAG
CTAGATAGCTCTCTTTTTTTAAAAACAATGATCATATTTTAAGATAATTTTAGATGAGTT
ATTCTTAATTTGTAACAAAAATGTGATATTTCTACTTTATATGTTTTATTAAGTATAACA
AGAACATTATAACTATTTATTGGTACAGTTACTAATGAGCACATTGCTATTTATATATAT
ATATATATTTTTTTTCTTTTCAAAAATTTTGTACTGAGAGTATGTGCAGTAGTTGACTAC
TTTGCAGAACTGGTGGCAAATATAACTTGCATGGTAGTATGCATGACAAAAATAGAAATT
TGAGTAATTTTAACTTTTGTTAAGTACGTGGTTCATAATAAAAGTCATATACTAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCAGAAGAAGCTCATAAAATATTTGAAGGTCTTGGCCCAAAAGTTGAACTGCCGCTCT
ACAACCAGCCGTCAGATACCAAGGTGTACCACGAGAACATCAAGACTGGAGTACCTGCAA
GGCGCATGATGAAGTAAGATAATGAAGCTTTTTCATTTAAGACTAGTGATGACACCGTCC
CCACCAAGCCACATCTGCCATTGCAAAGTAGAAGTGCCACGGATCATTTTATCATTATTC
AAAATCCTATTCTAGGGAAATCCCTTCCATGACTCTTGCTAATGACGGTATTTGTAGATC
CTTCTGCCATTTCATGTCCTGGTGCCTTGGAAGTGCTCAGCCACCTCCTGTGGGTGTGGA
GGCTGCTCCAGAATGTAGTCTGCTTAGCCTTGCTCATCCCAGACACCAGGCCTTTATGGA
ATAAGAAATAAGTGGAAAGAAAACCTAATTTCTTGATCTGATTGAAAGTAAGAGAGGAAG
CTAGATAGCTCTCTTTTTTTAAAAACAATGATCATATTTTAAGATAATTTTAGATGAGTT
ATTCTTAATTTGTAACAAAAATGTGATATTTCTACTTTATATGTTTTATTAAGTATAACA
AGAACATTATAACTATTTATTGGTACAGTTACTAATGAGCACATTGCTATTTATATATAT
ATATATATTTTTTTTCTTTTCAAAAATTTTGTACTGAGAGTATGTGCAGTAGTTGACTAC
TTTGCAGAACTGGTGGCAAATATAACTTGCATGGTAGTATGCATGACAAAAATAGAAATT
TGAGTAATTTTAACTTTTGTTAAGTACGTGGTTCATAATAAAAGTCATATACTAGAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               305-420, + strand, RNAz p=0.964662
               

               
               714-833, - strand, RNAz p=0.518926

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-420, + strand, RNAz p=0.964662
               

               
               714-833, - strand, RNAz p=0.518926

Similar Transcript(s): 5 entry(ies)

More info

Similar Transcript(s): 5 entry(ies)

Help | Less info


               
               305-415, M2PN-1636 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA 
(gb|CB845925.2|), blast E-value=2e-21, identity=89.19% 
               

               
               305-415, M2PN-2031 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA 
(gb|CB846302.1|), blast E-value=2e-21, identity=89.19% 
               

               
               305-420, LIB3523-005-P1-K1-C1 LIB3523 Canis familiaris cDNA clone 
(gb|DN339465.1|), blast E-value=6e-34, identity=91.38% 
               

               
               305-415, CES014681 Bovine BoMAC subtracted library Bos taurus cDNA clone 
(gb|DT319230.1|), blast E-value=2e-21, identity=89.19% 
               

               
               305-420, yw32e09.r1 Morton Fetal Cochlea Homo sapiens cDNA clone (gb|N71507.1|), 
blast E-value=3e-23, identity=89.74%

Similar Transcript(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               305-415, M2PN-1636 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA 
(gb|CB845925.2|), blast E-value=2e-21, identity=89.19% 
               

               
               305-415, M2PN-2031 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA 
(gb|CB846302.1|), blast E-value=2e-21, identity=89.19% 
               

               
               305-420, LIB3523-005-P1-K1-C1 LIB3523 Canis familiaris cDNA clone 
(gb|DN339465.1|), blast E-value=6e-34, identity=91.38% 
               

               
               305-415, CES014681 Bovine BoMAC subtracted library Bos taurus cDNA clone 
(gb|DT319230.1|), blast E-value=2e-21, identity=89.19% 
               

               
               305-420, yw32e09.r1 Morton Fetal Cochlea Homo sapiens cDNA clone (gb|N71507.1|), 
blast E-value=3e-23, identity=89.74%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               107-837, gnl|bosTau2|chr19 (23884585-23885323)
               

               
               107-837, gnl|Hg17|chr17 (15995655-15994911)
               

               
               107-837, gnl|Mm7|chr11 (62485020-62484302)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-837, gnl|bosTau2|chr19 (23884585-23885323)
               

               
               107-837, gnl|Hg17|chr17 (15995655-15994911)
               

               
               107-837, gnl|Mm7|chr11 (62485020-62484302)

	305-420, + strand, RNAz p=0.964662
	714-833, - strand, RNAz p=0.518926

	305-415, M2PN-1636 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA (gb\|CB845925.2\|), blast E-value=2e-21, identity=89.19%
	305-415, M2PN-2031 MOUSE POST-NATAL DAY 2 EYE Mus musculus cDNA 5', mRNA (gb\|CB846302.1\|), blast E-value=2e-21, identity=89.19%
	305-420, LIB3523-005-P1-K1-C1 LIB3523 Canis familiaris cDNA clone (gb\|DN339465.1\|), blast E-value=6e-34, identity=91.38%
	305-415, CES014681 Bovine BoMAC subtracted library Bos taurus cDNA clone (gb\|DT319230.1\|), blast E-value=2e-21, identity=89.19%
	305-420, yw32e09.r1 Morton Fetal Cochlea Homo sapiens cDNA clone (gb\|N71507.1\|), blast E-value=3e-23, identity=89.74%

	107-837, gnl\|bosTau2\|chr19 (23884585-23885323)
	107-837, gnl\|Hg17\|chr17 (15995655-15994911)
	107-837, gnl\|Mm7\|chr11 (62485020-62484302)