Non-Coding RNA Search

Ss1.1-Pig4-TMW8013F15.5

Sequence:


               
               ATAGGTAATGAGAACCCTGTTATTTTACCTTCTCTACTGCCCAGTTTTTTAGGTAAATTT
TGCAAGATAGTCTTATCTTTAATTGCCTAGGCCTATACTGCTGGGTGTTTGAGAATGAAA
ATATTTGATGAAAAGACTTAAAATAAATGCTTCAAAAAAGCAGCCACTCTTACTGAGTTA
TTCTATCTAAGGCAAAAACAAAAAAGAAACGACATTTCTATCCTTGGAGGTCCCCGCTAG
ACTCAAGGGCCAAGAATTTAATGAAAAAGAAGACTTTAGGGAAAATGCCCGATTTCTTCT
TCTGTGTTTTGAGAAAATTTAGCAGGCATGCTTCTCTTCTGTTGTATTTCTGATAAGGCA
GTTATATCTGTTTTTCCTTAGTTGAGAAGGCAGCATTGTATATAATTCGGTTTTTGTCTT
CTGACTAAATTGTAGCTACTCAGGGAAACTTGAAGCTGGAATATGGAATATACCTAACTG
TATCCCTTCCATTGCAGCTGCATTTCTGCATTTTCCAACAGTAGGACAATTAATAATTTG
AGGAATTTCTTTTAATTATAATCCTAAGCTCCCTGGGTGTTCTGTGAGTGATGGATGCTT
CTGAGGATAAGGAGTGTTAAAAATATAATTGCTATATCTATGAAAGAATAACTTCTTACT
CCATGATATTTAAAATGTATCCCATGTATAGCTGCAAGTAAGAAACTCCTTTTGAGAAGT
TTCATTATAGAAGCTTCAGTTATGCCTAACATTGAGTTTTCAAATATAAATGTTGCATTT
GGGGATCCAAATAATAACCGGAAATTCCTAGGTAAAAAGATAGTCATAACTAAGTAGAGA
TTTTGAAGTGAAATATCTTCTCCCTCATCTTTAATTCTCACCTATCTATGTGATAATGGC
TTATTTTACTTTTAAAATACAAGCAATCCTCATTATTTATAGTTTCATGTTTATAAATTC
ACCTACTCATTAAAATTTATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGTAATGAGAACCCTGTTATTTTACCTTCTCTACTGCCCAGTTTTTTAGGTAAATTT
TGCAAGATAGTCTTATCTTTAATTGCCTAGGCCTATACTGCTGGGTGTTTGAGAATGAAA
ATATTTGATGAAAAGACTTAAAATAAATGCTTCAAAAAAGCAGCCACTCTTACTGAGTTA
TTCTATCTAAGGCAAAAACAAAAAAGAAACGACATTTCTATCCTTGGAGGTCCCCGCTAG
ACTCAAGGGCCAAGAATTTAATGAAAAAGAAGACTTTAGGGAAAATGCCCGATTTCTTCT
TCTGTGTTTTGAGAAAATTTAGCAGGCATGCTTCTCTTCTGTTGTATTTCTGATAAGGCA
GTTATATCTGTTTTTCCTTAGTTGAGAAGGCAGCATTGTATATAATTCGGTTTTTGTCTT
CTGACTAAATTGTAGCTACTCAGGGAAACTTGAAGCTGGAATATGGAATATACCTAACTG
TATCCCTTCCATTGCAGCTGCATTTCTGCATTTTCCAACAGTAGGACAATTAATAATTTG
AGGAATTTCTTTTAATTATAATCCTAAGCTCCCTGGGTGTTCTGTGAGTGATGGATGCTT
CTGAGGATAAGGAGTGTTAAAAATATAATTGCTATATCTATGAAAGAATAACTTCTTACT
CCATGATATTTAAAATGTATCCCATGTATAGCTGCAAGTAAGAAACTCCTTTTGAGAAGT
TTCATTATAGAAGCTTCAGTTATGCCTAACATTGAGTTTTCAAATATAAATGTTGCATTT
GGGGATCCAAATAATAACCGGAAATTCCTAGGTAAAAAGATAGTCATAACTAAGTAGAGA
TTTTGAAGTGAAATATCTTCTCCCTCATCTTTAATTCTCACCTATCTATGTGATAATGGC
TTATTTTACTTTTAAAATACAAGCAATCCTCATTATTTATAGTTTCATGTTTATAAATTC
ACCTACTCATTAAAATTTATTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               347-447, + strand, RNAz p=0.747716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-447, + strand, RNAz p=0.747716

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               307-826, gnl|bosTau2|chr6 (50047652-50047155)
               

               
               307-826, gnl|Hg17|chr4 (74279418-74278417)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               307-826, gnl|bosTau2|chr6 (50047652-50047155)
               

               
               307-826, gnl|Hg17|chr4 (74279418-74278417)

	307-826, gnl\|bosTau2\|chr6 (50047652-50047155)
	307-826, gnl\|Hg17\|chr4 (74279418-74278417)