Non-Coding RNA Search

Ss1.1-Pig4-TMW8013F21.5

Sequence:


               
               CTCTGTAAGGCACGCAGTGGTTTGCAGAGTGATAGCTGCAGACAGAGCTCCCTGCCCTGG
ATAAGGAACAGCTACATTCGCTGTAAATGTGCCTGAAGAGCAATATCCAATCTTTGCGTT
AGCAGGCATTTAGCCCGTGGAACAGGAGGCTCGGAGGACTGGGAGTGAGCGCTGCCTGGG
AGATACTGACCGCCAGGACCGGAGTTCCCGGGGACGCCGTGCCCCCACTTGCCGGGCGTG
CGGGATCCGGAAACTGCCTGAACCTGCTTGGGGGCCAAGGGACGACGCCCCATCTCCTCT
CGCGAGGAGGACCCCCAAACTTCGCTCCCTTCGCTGCCACCCCTAAAAAAGCGGGTTAAA
AAAAAAAAAATCCCACCCACGGGGAGCGGCGGCTTGGCCTCGCCGGCTTGTGTTCCCGGG
CCCTGCACGGCTCTGTGACCCGCCTGTGGCTGCCGGTTCGAGCCCTGTCTCAGGCGCCGC
GGAGTCTCGAGCGTCCGTGACGTGGATTTTCACGCGTCAGAAGCCGCCACTCCCGCCCTT
CCCGCGAAGGAGGCGACTGGACCCCGAGAAGCACCCTCGTTCTTGCTCAGCGGCGGGTCG
GCGGGGAGGTCACACTCTTCTCCCCCACCGCTCCTTATCGCTATCAAGAGAGAGACTCGG
AGAGCCCCCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGTAAGGCACGCAGTGGTTTGCAGAGTGATAGCTGCAGACAGAGCTCCCTGCCCTGG
ATAAGGAACAGCTACATTCGCTGTAAATGTGCCTGAAGAGCAATATCCAATCTTTGCGTT
AGCAGGCATTTAGCCCGTGGAACAGGAGGCTCGGAGGACTGGGAGTGAGCGCTGCCTGGG
AGATACTGACCGCCAGGACCGGAGTTCCCGGGGACGCCGTGCCCCCACTTGCCGGGCGTG
CGGGATCCGGAAACTGCCTGAACCTGCTTGGGGGCCAAGGGACGACGCCCCATCTCCTCT
CGCGAGGAGGACCCCCAAACTTCGCTCCCTTCGCTGCCACCCCTAAAAAAGCGGGTTAAA
AAAAAAAAAATCCCACCCACGGGGAGCGGCGGCTTGGCCTCGCCGGCTTGTGTTCCCGGG
CCCTGCACGGCTCTGTGACCCGCCTGTGGCTGCCGGTTCGAGCCCTGTCTCAGGCGCCGC
GGAGTCTCGAGCGTCCGTGACGTGGATTTTCACGCGTCAGAAGCCGCCACTCCCGCCCTT
CCCGCGAAGGAGGCGACTGGACCCCGAGAAGCACCCTCGTTCTTGCTCAGCGGCGGGTCG
GCGGGGAGGTCACACTCTTCTCCCCCACCGCTCCTTATCGCTATCAAGAGAGAGACTCGG
AGAGCCCCCCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               261-405, - strand, RNAz p=0.999951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-405, - strand, RNAz p=0.999951

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               335-448, - strand, RNAmicro p=0.980035

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               335-448, - strand, RNAmicro p=0.980035

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               103-670, gnl|bosTau2|chr17 (19507126-19507688)
               

               
               103-670, gnl|Hg17|chr4 (124676350-124676935)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-670, gnl|bosTau2|chr17 (19507126-19507688)
               

               
               103-670, gnl|Hg17|chr4 (124676350-124676935)

	103-670, gnl\|bosTau2\|chr17 (19507126-19507688)
	103-670, gnl\|Hg17\|chr4 (124676350-124676935)