Non-Coding RNA Search

Ss1.1-Pig4-TMW8013K05.5

Sequence:


               
               GCGGCTCGAGAGCTCATCGGTGGGGCTACGTGCTGAGTGCTACTCTCAGCCTACCCCATT
ACCAGACTATGTGCTAAAACTGACCTTTCAGACATTTGGTCCATTAGTCCTGGGTCTCTT
CTCTGTTGCATTCATTCATTTAGCACCCATTGAATGCCTATTCTCTGCCAGGAGCCCTGC
TGGGCCCTGGAATACTGAGATGAAGGAGGCAGCCCCAGCCCTCAAGTCGCTTGGTCTTAT
GACACACAGTATTAAGCAGAGAGAGGCTGGGCAAGCTGCATGCCTGGCTCCTCTTCTTCA
GAGCTGTGTGACCTCTTCAGGCCTCAGTTTCCTCATCCGTAAAATGGGATACCAACAGCA
CAGACCTCCCATCTCATAGGATTGCTGTGAGAATAAAGTGAGGCAAGGCCTGTGAAGCCC
TTAGAACAGTGCCCAGAACAAAGGACATGTTCAGTAGCAGTTAGCTTGACTCATTACTAC
CACAGTGTCCACAGGGGCTGTGGGAGCAGAGACGGCGGGGGGGGGGGCGGCTGGAGAGAC
CAAGGAGGGCTTCCCAGAGGAGGTGATGTTTGAGTTTTAGACATTAAGACCAAGTAGGAG
AGGAGTTCCTGGTGCCTCAGTGAGTTAAGAATCTAGTATTGTGGCTCAGGTCACTGCTGT
GGCATCAGTTTGATCCCTGGCTCAGGAACTTCTATATACCACAGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGAGCTCATCGGTGGGGCTACGTGCTGAGTGCTACTCTCAGCCTACCCCATT
ACCAGACTATGTGCTAAAACTGACCTTTCAGACATTTGGTCCATTAGTCCTGGGTCTCTT
CTCTGTTGCATTCATTCATTTAGCACCCATTGAATGCCTATTCTCTGCCAGGAGCCCTGC
TGGGCCCTGGAATACTGAGATGAAGGAGGCAGCCCCAGCCCTCAAGTCGCTTGGTCTTAT
GACACACAGTATTAAGCAGAGAGAGGCTGGGCAAGCTGCATGCCTGGCTCCTCTTCTTCA
GAGCTGTGTGACCTCTTCAGGCCTCAGTTTCCTCATCCGTAAAATGGGATACCAACAGCA
CAGACCTCCCATCTCATAGGATTGCTGTGAGAATAAAGTGAGGCAAGGCCTGTGAAGCCC
TTAGAACAGTGCCCAGAACAAAGGACATGTTCAGTAGCAGTTAGCTTGACTCATTACTAC
CACAGTGTCCACAGGGGCTGTGGGAGCAGAGACGGCGGGGGGGGGGGCGGCTGGAGAGAC
CAAGGAGGGCTTCCCAGAGGAGGTGATGTTTGAGTTTTAGACATTAAGACCAAGTAGGAG
AGGAGTTCCTGGTGCCTCAGTGAGTTAAGAATCTAGTATTGTGGCTCAGGTCACTGCTGT
GGCATCAGTTTGATCCCTGGCTCAGGAACTTCTATATACCACAGGTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               262-376, - strand, RNAz p=0.786323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-376, - strand, RNAz p=0.786323

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               223-428, gnl|bosTau2|chr2 (79803448-79803251)
               

               
               223-428, gnl|Hg17|chr1 (26037839-26038057)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-428, gnl|bosTau2|chr2 (79803448-79803251)
               

               
               223-428, gnl|Hg17|chr1 (26037839-26038057)

	223-428, gnl\|bosTau2\|chr2 (79803448-79803251)
	223-428, gnl\|Hg17\|chr1 (26037839-26038057)