Non-Coding RNA Search

Ss1.1-Pig4-TMW8013L08.3

Sequence:


               
               GTCCCTGTACTCCAGCACCCACTCCTGCCCATTTGCTGGGGGACCAGAACCTGAGACCGG
AACCCCCCTTGGCAATGCGACCCTCTCGCCCAGCTCCTCTGCCTCCCTCAGCCCAGCAGA
GAACGACTGCAGCAGCCACCAAGCCCCTAACTTGTAACCGTCCTGCCTGGGAGCCCAAAG
AAAAGGAGCACCCTGAGAACATGGAAAAGACTCTGGACCAGACTTCCCAGTGTCCCTTAG
TCTTGGTGAAGATTCAGGAAATGGAGCAGGATTTGGATATGTGCCTCAGGGCTCAGGAAG
AGCTGAACTTGTTGCTGGAGGAGAAGCAAGAGGAATCACTAAGGGCAGAGACCCTTGAAA
ATCTTAAGCTGTGTGAGAGTAACATTGAGAGTTTGAATCTGGAGCTCCAGCAGCTTAGAG
AAATGACGCTCCTCTCCTCCCAGTCTTCGTCGCCGGTGGCCCCTTCTGGGTCTGTGTCCA
CTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAACCAAGGTGATAGAAGAACTTCTTC
AGACAGAAAGAGACTACATTCGGGATCTGGAAATGTGTATTGAGCGGATCATGATACCCC
TGCAGCAGGCACAGATACCAAACATTGATTTTGAGGGGCTTTTTGGAAATATGCAGATGG
TGATTAAGGTCTCGAAGCAATTGTTGGCTGATCTGGAAATCAGCGATGCTGTAGGACCCG
TGTTTCTTGATCACCGGGATGAGCTTGAAGGAACATACAAGGTTTACTGCCAGAATCATG
ACGAGGCCATCTCACTGCTCGAAATCTATGAGAAGGATGAGAAGATCCAGAAGCATCTTC
AGGACTTCTTGGCAGATCTTAAGAGCCTGTATAACGAATGGGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCTGTACTCCAGCACCCACTCCTGCCCATTTGCTGGGGGACCAGAACCTGAGACCGG
AACCCCCCTTGGCAATGCGACCCTCTCGCCCAGCTCCTCTGCCTCCCTCAGCCCAGCAGA
GAACGACTGCAGCAGCCACCAAGCCCCTAACTTGTAACCGTCCTGCCTGGGAGCCCAAAG
AAAAGGAGCACCCTGAGAACATGGAAAAGACTCTGGACCAGACTTCCCAGTGTCCCTTAG
TCTTGGTGAAGATTCAGGAAATGGAGCAGGATTTGGATATGTGCCTCAGGGCTCAGGAAG
AGCTGAACTTGTTGCTGGAGGAGAAGCAAGAGGAATCACTAAGGGCAGAGACCCTTGAAA
ATCTTAAGCTGTGTGAGAGTAACATTGAGAGTTTGAATCTGGAGCTCCAGCAGCTTAGAG
AAATGACGCTCCTCTCCTCCCAGTCTTCGTCGCCGGTGGCCCCTTCTGGGTCTGTGTCCA
CTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAACCAAGGTGATAGAAGAACTTCTTC
AGACAGAAAGAGACTACATTCGGGATCTGGAAATGTGTATTGAGCGGATCATGATACCCC
TGCAGCAGGCACAGATACCAAACATTGATTTTGAGGGGCTTTTTGGAAATATGCAGATGG
TGATTAAGGTCTCGAAGCAATTGTTGGCTGATCTGGAAATCAGCGATGCTGTAGGACCCG
TGTTTCTTGATCACCGGGATGAGCTTGAAGGAACATACAAGGTTTACTGCCAGAATCATG
ACGAGGCCATCTCACTGCTCGAAATCTATGAGAAGGATGAGAAGATCCAGAAGCATCTTC
AGGACTTCTTGGCAGATCTTAAGAGCCTGTATAACGAATGGGGCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55859656|emb|CAI11008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55859656|emb|CAI11008.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-420, + strand, RNAz p=0.69155

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-420, + strand, RNAz p=0.69155

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-420, gnl|bosTau2|chr26 (12081328-12081747)
               

               
               1-420, gnl|Hg17|chr10 (101705380-101704961)
               

               
               1-420, gnl|Mm7|chr19 (43795362-43794943)
               


               
               713-863, gnl|bosTau2|chr26 (12135828-12135978)
               

               
               713-863, gnl|Hg17|chr10 (101649815-101649665)
               

               
               713-863, gnl|Mm7|chr19 (43764184-43764034)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr26 (12081328-12081747)
               

               
               1-420, gnl|Hg17|chr10 (101705380-101704961)
               

               
               1-420, gnl|Mm7|chr19 (43795362-43794943)
               


               
               713-863, gnl|bosTau2|chr26 (12135828-12135978)
               

               
               713-863, gnl|Hg17|chr10 (101649815-101649665)
               

               
               713-863, gnl|Mm7|chr19 (43764184-43764034)

	1-420, gnl\|bosTau2\|chr26 (12081328-12081747)
	1-420, gnl\|Hg17\|chr10 (101705380-101704961)
	1-420, gnl\|Mm7\|chr19 (43795362-43794943)

	713-863, gnl\|bosTau2\|chr26 (12135828-12135978)
	713-863, gnl\|Hg17\|chr10 (101649815-101649665)
	713-863, gnl\|Mm7\|chr19 (43764184-43764034)