Non-Coding RNA Search

Ss1.1-Pig4-TMW8013O07.3

Sequence:


               
               CACCCCTACAGGTGGCTGTGGTCTCCACGGCTGAGAAGACACAGAGGTGATGCCCTGATG
TCCTCAGGGCTGAAGCTCTGCCAAAGCTGATGTAACTGTGGGGGCAGCGCTGCTCAGTCT
CTAAAGTGAAAACACCCTAATCCCTACACCACTGGAGGACCCCCCCCCACCCCCGGTGAG
CTTATTAAGATGCTCAGGCTCAGCAGGGCTGAGGAGGAGCCTGAGACTTAGCATTTTTAA
CCAGCTCCTCAGATGATGTTGAGGCTGCTGGTCCAGGAACCACATTTGGAGTAACCAGGT
CATAGAGGATTCAGCTTTAATCTCTCAAAGAACAAACTGCAAACTTCAAGAAGGGTTGGC
CGTCACAGAAATTATTTCTGGTCCTGATAACTGCCTCCTCCCCCATTTCTCCCGGAATCA
GATGGAGCAGATTTAACCCTTTCCTGGACCCAGTGCTGTTCCCCTCAAGCCACTGAGGAA
AGGCTTCCTGTCCCAGTCCTGACGCACACCGGTTTCTGTGCTGGGTACCCTCTCTGCTGT
CCATTGCTAGTTTGAGCGTTTCTTCCTCCCTCCCCCATCCCCTTCCCCAGGGTACCTGCT
TCATCAGACAGAAGTAGGTAAGGCCTGAGCCTCAGAATTAAAGAGCACACCGAAGTTCTG
TGGTGCAGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCTACAGGTGGCTGTGGTCTCCACGGCTGAGAAGACACAGAGGTGATGCCCTGATG
TCCTCAGGGCTGAAGCTCTGCCAAAGCTGATGTAACTGTGGGGGCAGCGCTGCTCAGTCT
CTAAAGTGAAAACACCCTAATCCCTACACCACTGGAGGACCCCCCCCCACCCCCGGTGAG
CTTATTAAGATGCTCAGGCTCAGCAGGGCTGAGGAGGAGCCTGAGACTTAGCATTTTTAA
CCAGCTCCTCAGATGATGTTGAGGCTGCTGGTCCAGGAACCACATTTGGAGTAACCAGGT
CATAGAGGATTCAGCTTTAATCTCTCAAAGAACAAACTGCAAACTTCAAGAAGGGTTGGC
CGTCACAGAAATTATTTCTGGTCCTGATAACTGCCTCCTCCCCCATTTCTCCCGGAATCA
GATGGAGCAGATTTAACCCTTTCCTGGACCCAGTGCTGTTCCCCTCAAGCCACTGAGGAA
AGGCTTCCTGTCCCAGTCCTGACGCACACCGGTTTCTGTGCTGGGTACCCTCTCTGCTGT
CCATTGCTAGTTTGAGCGTTTCTTCCTCCCTCCCCCATCCCCTTCCCCAGGGTACCTGCT
TCATCAGACAGAAGTAGGTAAGGCCTGAGCCTCAGAATTAAAGAGCACACCGAAGTTCTG
TGGTGCAGCAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               172-284, + strand, RNAz p=0.964765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-284, + strand, RNAz p=0.964765

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               172-649, gnl|bosTau2|chr3 (61049313-61049792)
               

               
               172-649, gnl|Mm7|chr4 (106672025-106671626)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-649, gnl|bosTau2|chr3 (61049313-61049792)
               

               
               172-649, gnl|Mm7|chr4 (106672025-106671626)

	172-649, gnl\|bosTau2\|chr3 (61049313-61049792)
	172-649, gnl\|Mm7\|chr4 (106672025-106671626)