Ss1.1-Pig4-TMW8013O16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGAGGCAGTGTCTTGACTTTTGGGCGCAGGGCCCAAGAGGGAGCGCGGGAGGCACCGT CCCTCCTGTACGCCTCACCTCACGCTACTCTCCGTCTTCTCCGACTTCCGCCGCCTGGAC GGCTCCCGACCGACCGCCCGGGGCAGAGGTGGAAGTCTCGGACGCGGGGGCTGTGGCGAG GCCGCGGCCCTCGGAACGGAGATAGCAGCGTCAGCGCTGGGGAAGCGCAGGAAGGAAGAT GGCGTCGGAGCTGGAGCCCGAGGTGCAGGCCATCGACCGGAGTTTGCTGGAATGTTCGGC TGAGGAGACCGCGGGGAAATGGCTGCAAGCAACTGACCTCGCTAGAGAAGTATATCAGCA TTTGGCCTATTATGTACCCAAAATCTACTGCAGGGGTCCCAACCCTTTTCCACAGAAAGA AGACACGTTGGCACACCAAGTTTTGTTGGGACCAATGGAATGGTACCTTTGTGGTGAAGA TCCTGGGTTGGGATTTTCAAAACTTGAACAAACAAACAAACCGTCTCATCTTTGTGGTCG TGTTTTTAAAGTGGGAGAGCCTACATACTCTTGCAGAGACTGTGCAGTTGATCCAACTTG TGTTTTATGCATGGAGTGCTTTTTGGGAAGTATTCACAGAGACCATCGATATAGGATGAC AACATCAGGAGGTGGAGGTTTCTGTGACTGTGGTGATACTGAAGCTTGGAAAGAGGGTCC TTACTGTCAAAAACATGAACTTAACACCTCTGAAATTGAGGAAGAAGAGGATCCTCTTGT GCATTTATCAGAAGATGTGATAGCCAGAACTTACAACATTTTTGCTATTATGTTTCGGTA TGCAGTAGAGATATTAACCTGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGAGGCAGTGTCTTGACTTTTGGGCGCAGGGCCCAAGAGGGAGCGCGGGAGGCACCGT CCCTCCTGTACGCCTCACCTCACGCTACTCTCCGTCTTCTCCGACTTCCGCCGCCTGGAC GGCTCCCGACCGACCGCCCGGGGCAGAGGTGGAAGTCTCGGACGCGGGGGCTGTGGCGAG GCCGCGGCCCTCGGAACGGAGATAGCAGCGTCAGCGCTGGGGAAGCGCAGGAAGGAAGAT GGCGTCGGAGCTGGAGCCCGAGGTGCAGGCCATCGACCGGAGTTTGCTGGAATGTTCGGC TGAGGAGACCGCGGGGAAATGGCTGCAAGCAACTGACCTCGCTAGAGAAGTATATCAGCA TTTGGCCTATTATGTACCCAAAATCTACTGCAGGGGTCCCAACCCTTTTCCACAGAAAGA AGACACGTTGGCACACCAAGTTTTGTTGGGACCAATGGAATGGTACCTTTGTGGTGAAGA TCCTGGGTTGGGATTTTCAAAACTTGAACAAACAAACAAACCGTCTCATCTTTGTGGTCG TGTTTTTAAAGTGGGAGAGCCTACATACTCTTGCAGAGACTGTGCAGTTGATCCAACTTG TGTTTTATGCATGGAGTGCTTTTTGGGAAGTATTCACAGAGACCATCGATATAGGATGAC AACATCAGGAGGTGGAGGTTTCTGTGACTGTGGTGATACTGAAGCTTGGAAAGAGGGTCC TTACTGTCAAAAACATGAACTTAACACCTCTGAAATTGAGGAAGAAGAGGATCCTCTTGT GCATTTATCAGAAGATGTGATAGCCAGAACTTACAACATTTTTGCTATTATGTTTCGGTA TGCAGTAGAGATATTAACCTGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 395-514, + strand, RNAz p=0.784067 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 395-514, + strand, RNAz p=0.784067 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 316-576, gnl|bosTau2|chr23 (16946441-16946701) | |
| 316-576, gnl|canFam2|chr12 (14180629-14180916) | |
| 316-576, gnl|danRer3|chr13 (1555371-1555064) | |
| 316-576, gnl|dasNov1|scaffold_21871 (48845-49132) | |
| 316-576, gnl|echTel1|scaffold_308813 (39661-39379) | |
| 316-576, gnl|fr1|chrUn (94728092-94728393) | |
| 316-576, gnl|galGal2|chr3 (19329569-19329856) | |
| 316-576, gnl|hg17|chr6 (42649426-42649713) | |
| 316-576, gnl|Hg17|chr6 (42649449-42649709) | |
| 316-576, gnl|loxAfr1|scaffold_99181 (732-1011) | |
| 316-576, gnl|mm7|chr17 (45131787-45131504) | |
| 316-576, gnl|Mm7|chr17 (45131766-45131506) | |
| 316-576, gnl|monDom2|scaffold_0 (199103475-199103188) | |
| 316-576, gnl|oryCun1|scaffold_89326 (3231-3518) | |
| 316-576, gnl|panTro1|chr5 (43227952-43228239) | |
| 316-576, gnl|rheMac2|chr4 (42446671-42446958) | |
| 316-576, gnl|rn3|chr9 (9171317-9171600) | |
| 316-576, gnl|tetNig1|chr17 (7871270-7870970) | |
| 316-576, gnl|xenTro1|scaffold_68 (1979473-1979760) | |
| 655-770, gnl|bosTau2|chr23 (16971355-16971470) | |
| 655-770, gnl|canFam2|chr12 (14215082-14215207) | |
| 655-770, gnl|danRer3|chr13 (1546908-1546778) | |
| 655-770, gnl|dasNov1|scaffold_159728 (725-600) | |
| 655-770, gnl|echTel1|scaffold_320454 (745-877) | |
| 655-770, gnl|fr1|chrUn (94729074-94729179) | |
| 655-770, gnl|galGal2|chr3 (19332333-19332457) | |
| 655-770, gnl|hg17|chr6 (42669906-42670031) | |
| 655-770, gnl|Hg17|chr6 (42669906-42670021) | |
| 655-770, gnl|loxAfr1|scaffold_221524 (982-857) | |
| 655-770, gnl|mm7|chr17 (45122028-45121903) | |
| 655-770, gnl|Mm7|chr17 (45122026-45121911) | |
| 655-770, gnl|monDom2|scaffold_0 (199080556-199080431) | |
| 655-770, gnl|oryCun1|scaffold_201716 (55466-55341) | |
| 655-770, gnl|panTro1|chr5 (43248426-43248551) | |
| 655-770, gnl|rheMac2|chr4 (42467726-42467851) | |
| 655-770, gnl|rn3|chr9 (9179316-9179441) | |
| 655-770, gnl|tetNig1|chr17 (7870430-7870341) | |
| 655-770, gnl|xenTro1|scaffold_68 (1987120-1987233) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 316-576, gnl|bosTau2|chr23 (16946441-16946701) | |
| 316-576, gnl|canFam2|chr12 (14180629-14180916) | |
| 316-576, gnl|danRer3|chr13 (1555371-1555064) | |
| 316-576, gnl|dasNov1|scaffold_21871 (48845-49132) | |
| 316-576, gnl|echTel1|scaffold_308813 (39661-39379) | |
| 316-576, gnl|fr1|chrUn (94728092-94728393) | |
| 316-576, gnl|galGal2|chr3 (19329569-19329856) | |
| 316-576, gnl|hg17|chr6 (42649426-42649713) | |
| 316-576, gnl|Hg17|chr6 (42649449-42649709) | |
| 316-576, gnl|loxAfr1|scaffold_99181 (732-1011) | |
| 316-576, gnl|mm7|chr17 (45131787-45131504) | |
| 316-576, gnl|Mm7|chr17 (45131766-45131506) | |
| 316-576, gnl|monDom2|scaffold_0 (199103475-199103188) | |
| 316-576, gnl|oryCun1|scaffold_89326 (3231-3518) | |
| 316-576, gnl|panTro1|chr5 (43227952-43228239) | |
| 316-576, gnl|rheMac2|chr4 (42446671-42446958) | |
| 316-576, gnl|rn3|chr9 (9171317-9171600) | |
| 316-576, gnl|tetNig1|chr17 (7871270-7870970) | |
| 316-576, gnl|xenTro1|scaffold_68 (1979473-1979760) | |
| 655-770, gnl|bosTau2|chr23 (16971355-16971470) | |
| 655-770, gnl|canFam2|chr12 (14215082-14215207) | |
| 655-770, gnl|danRer3|chr13 (1546908-1546778) | |
| 655-770, gnl|dasNov1|scaffold_159728 (725-600) | |
| 655-770, gnl|echTel1|scaffold_320454 (745-877) | |
| 655-770, gnl|fr1|chrUn (94729074-94729179) | |
| 655-770, gnl|galGal2|chr3 (19332333-19332457) | |
| 655-770, gnl|hg17|chr6 (42669906-42670031) | |
| 655-770, gnl|Hg17|chr6 (42669906-42670021) | |
| 655-770, gnl|loxAfr1|scaffold_221524 (982-857) | |
| 655-770, gnl|mm7|chr17 (45122028-45121903) | |
| 655-770, gnl|Mm7|chr17 (45122026-45121911) | |
| 655-770, gnl|monDom2|scaffold_0 (199080556-199080431) | |
| 655-770, gnl|oryCun1|scaffold_201716 (55466-55341) | |
| 655-770, gnl|panTro1|chr5 (43248426-43248551) | |
| 655-770, gnl|rheMac2|chr4 (42467726-42467851) | |
| 655-770, gnl|rn3|chr9 (9179316-9179441) | |
| 655-770, gnl|tetNig1|chr17 (7870430-7870341) | |
| 655-770, gnl|xenTro1|scaffold_68 (1987120-1987233) |