Ss1.1-Pig4-TMW8014B12.3
|
GGGCCGACACAGACGGAGGGTCCAGGGCCAGCTCTGCCACTCAGATCACCATGTACAGTT
TCATGGGTGGTGGCCTCTTCTGTGCCTGGGTGGGGACGATTCTCCTGGTGGTAGCCACAG
CGACAGACCACTGGATGCAGTACCGGCTGTCGGGGGCCTTCGCCCACCAGGGCGGTGTGG
CGATACTGCCTGGGCAGCAAGTGCTACCTGCAGACGGAAAGCATCGCTTACTGGAATGCC
ACCCGGGCCTTCATGATCCTGTCCTCCCTGTGTGCCACCTCGGGCATCATCATGGGCATC
ATGGCCTTCGCTCAGCAGTCCACGTTCACCCGCCTCTCCCGGCCCTTCTCTGCCGGCATC
ATGTTTTTCGCCTCCACCTTTTTCGTCCTGCTGGCCTTGGCCATCTACACTGGCGTCACC
GTCAGCTTCCTCGGTCGCCGCTTTGGGGACTGGCGCTTCTCCTGGTCCTACATCCTGGGC
TGGGTGGCCCTGCTCATGACTTTCTTTGCAGGAATTTTCTACATGTGCGCCTATCGGATG
CATGAATGTCGGCGCCTGTCCACACCCCACTGAGCCCAAATGTCTGCCCCGGCTTCACCC
AGAAGTGACAGTGAGGTCACTGAAGAGGAGGGGGAGGGTCTAGGGGCCTGAAATCCTGGT
TGCTAGGGGCATGAGGGGGTCCGGTCCCGGACTCTGGGTTGGGGGGGCCCCTGACTCCTG
TTTCCCAAGGGGGAAGGAGCAAGAATGGGGGCTGGTGGAAGCTGTTGAGGAGACCCAAGG
CCCCACCCACCAGGGAGGTTGTTAGCGAAATGGAATCTCCACTAGAGCGACTTTTTGGAG
TCTAATAAAACTGATTGAAACGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGCCGACACAGACGGAGGGTCCAGGGCCAGCTCTGCCACTCAGATCACCATGTACAGTT
TCATGGGTGGTGGCCTCTTCTGTGCCTGGGTGGGGACGATTCTCCTGGTGGTAGCCACAG
CGACAGACCACTGGATGCAGTACCGGCTGTCGGGGGCCTTCGCCCACCAGGGCGGTGTGG
CGATACTGCCTGGGCAGCAAGTGCTACCTGCAGACGGAAAGCATCGCTTACTGGAATGCC
ACCCGGGCCTTCATGATCCTGTCCTCCCTGTGTGCCACCTCGGGCATCATCATGGGCATC
ATGGCCTTCGCTCAGCAGTCCACGTTCACCCGCCTCTCCCGGCCCTTCTCTGCCGGCATC
ATGTTTTTCGCCTCCACCTTTTTCGTCCTGCTGGCCTTGGCCATCTACACTGGCGTCACC
GTCAGCTTCCTCGGTCGCCGCTTTGGGGACTGGCGCTTCTCCTGGTCCTACATCCTGGGC
TGGGTGGCCCTGCTCATGACTTTCTTTGCAGGAATTTTCTACATGTGCGCCTATCGGATG
CATGAATGTCGGCGCCTGTCCACACCCCACTGAGCCCAAATGTCTGCCCCGGCTTCACCC
AGAAGTGACAGTGAGGTCACTGAAGAGGAGGGGGAGGGTCTAGGGGCCTGAAATCCTGGT
TGCTAGGGGCATGAGGGGGTCCGGTCCCGGACTCTGGGTTGGGGGGGCCCCTGACTCCTG
TTTCCCAAGGGGGAAGGAGCAAGAATGGGGGCTGGTGGAAGCTGTTGAGGAGACCCAAGG
CCCCACCCACCAGGGAGGTTGTTAGCGAAATGGAATCTCCACTAGAGCGACTTTTTGGAG
TCTAATAAAACTGATTGAAACGAA
|
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gi|1708852|sp|P20274|LMIP_BOVIN |
Protein identifier
|
gi|1708852|sp|P20274|LMIP_BOVIN |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
42-224, gnl|bosTau2|chr18 (50765505-50765324) |
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42-224, gnl|canFam2|chr1 (108473233-108473019) |
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42-224, gnl|danRer3|chr19 (3477488-3477672) |
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42-224, gnl|dasNov1|scaffold_49189 (42636-42423) |
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42-224, gnl|fr1|chrUn (271519106-271519337) |
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42-224, gnl|hg17|chr19 (56582325-56582539) |
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42-224, gnl|Hg17|chr19 (56582518-56582337) |
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42-224, gnl|loxAfr1|scaffold_10332 (30823-31031) |
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42-224, gnl|mm7|chr7 (39606347-39606134) |
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42-224, gnl|Mm7|chr7 (39606152-39606333) |
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42-224, gnl|monDom2|scaffold_212 (286996-287218) |
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42-224, gnl|panTro1|chr20 (54001880-54002094) |
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42-224, gnl|rheMac2|chr19 (57478511-57478725) |
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42-224, gnl|rn3|chr1 (93884863-93884650) |
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42-224, gnl|tetNig1|chr21 (1447149-1447337) |
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42-224, gnl|xenTro1|scaffold_367 (529074-529303) |
| |
|
226-376, gnl|bosTau2|chr18 (50761066-50760916) |
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226-376, gnl|Hg17|chr19 (56577634-56577484) |
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226-376, gnl|Mm7|chr7 (39609137-39609287) |
| |
|
507-861, gnl|bosTau2|chr18 (50759353-50759002) |
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507-861, gnl|Hg17|chr19 (56575333-56574977) |
|
507-861, gnl|Mm7|chr7 (39611213-39611559) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
42-224, gnl|bosTau2|chr18 (50765505-50765324) |
|
42-224, gnl|canFam2|chr1 (108473233-108473019) |
|
42-224, gnl|danRer3|chr19 (3477488-3477672) |
|
42-224, gnl|dasNov1|scaffold_49189 (42636-42423) |
|
42-224, gnl|fr1|chrUn (271519106-271519337) |
|
42-224, gnl|hg17|chr19 (56582325-56582539) |
|
42-224, gnl|Hg17|chr19 (56582518-56582337) |
|
42-224, gnl|loxAfr1|scaffold_10332 (30823-31031) |
|
42-224, gnl|mm7|chr7 (39606347-39606134) |
|
42-224, gnl|Mm7|chr7 (39606152-39606333) |
|
42-224, gnl|monDom2|scaffold_212 (286996-287218) |
|
42-224, gnl|panTro1|chr20 (54001880-54002094) |
|
42-224, gnl|rheMac2|chr19 (57478511-57478725) |
|
42-224, gnl|rn3|chr1 (93884863-93884650) |
|
42-224, gnl|tetNig1|chr21 (1447149-1447337) |
|
42-224, gnl|xenTro1|scaffold_367 (529074-529303) |
| |
|
226-376, gnl|bosTau2|chr18 (50761066-50760916) |
|
226-376, gnl|Hg17|chr19 (56577634-56577484) |
|
226-376, gnl|Mm7|chr7 (39609137-39609287) |
| |
|
507-861, gnl|bosTau2|chr18 (50759353-50759002) |
|
507-861, gnl|Hg17|chr19 (56575333-56574977) |
|
507-861, gnl|Mm7|chr7 (39611213-39611559) |
