Non-Coding RNA Search

Ss1.1-Pig4-TMW8014C03.5

Sequence:


               
               ATGCTCAGAAGGCTGGGTATGGTGCTGCTGTGGTTCACAACGTAAACTCCAATGAACTTC
TGAACATGGTGTGGAATAGTGGTAAGGTCCGGGGATCTGGACAGCTGGGTTTTCAGTAGA
GCTCAGACTGAGAGATGGTGGGAGGGTTGAAGGCTTGGGGAAAAGAAGTCAGTCCGTGTG
TGGGTTGGGGCAAGAAAGCCAAAGTCCAGGGTTACCAAAGGACTCCTCTGGGAGGTTCGG
TCCCCAGTGTGTAATGCCCTGATCCCTGCAGAGGAAATCCAGCAGCAGATCTGGATCCCG
TCTGTGTTCATTGGGGAGAGGAGCTCCCAGTACCTGCGTGCCCTCTTTGTCTACGAGAAG
GGGTAGGACTCGTCCCTCCTTCCCACTCTTCTTCAGCACTTCCATGCCAGCCTGGAGCCT
AAGCCTGTGCCCCAGCCCTTCAGCCTCAGGCCCTTCATACTCTGCTTCTTGACTTTCTTC
CCACCTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTCAGAAGGCTGGGTATGGTGCTGCTGTGGTTCACAACGTAAACTCCAATGAACTTC
TGAACATGGTGTGGAATAGTGGTAAGGTCCGGGGATCTGGACAGCTGGGTTTTCAGTAGA
GCTCAGACTGAGAGATGGTGGGAGGGTTGAAGGCTTGGGGAAAAGAAGTCAGTCCGTGTG
TGGGTTGGGGCAAGAAAGCCAAAGTCCAGGGTTACCAAAGGACTCCTCTGGGAGGTTCGG
TCCCCAGTGTGTAATGCCCTGATCCCTGCAGAGGAAATCCAGCAGCAGATCTGGATCCCG
TCTGTGTTCATTGGGGAGAGGAGCTCCCAGTACCTGCGTGCCCTCTTTGTCTACGAGAAG
GGGTAGGACTCGTCCCTCCTTCCCACTCTTCTTCAGCACTTCCATGCCAGCCTGGAGCCT
AAGCCTGTGCCCCAGCCCTTCAGCCTCAGGCCCTTCATACTCTGCTTCTTGACTTTCTTC
CCACCTCCAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.855171
               

               
               197-314, - strand, RNAz p=0.968263

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.855171
               

               
               197-314, - strand, RNAz p=0.968263

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               246-322, + strand, RNAmicro p=0.904104

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               246-322, + strand, RNAmicro p=0.904104

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-482, gnl|bosTau2|chr19 (14833517-14833971)
               

               
               1-482, gnl|Hg17|chr17 (4786624-4787112)
               

               
               1-482, gnl|Mm7|chr11 (70731026-70731418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr19 (14833517-14833971)
               

               
               1-482, gnl|Hg17|chr17 (4786624-4787112)
               

               
               1-482, gnl|Mm7|chr11 (70731026-70731418)

	1-118, - strand, RNAz p=0.855171
	197-314, - strand, RNAz p=0.968263

	1-482, gnl\|bosTau2\|chr19 (14833517-14833971)
	1-482, gnl\|Hg17\|chr17 (4786624-4787112)
	1-482, gnl\|Mm7\|chr11 (70731026-70731418)