Ss1.1-Pig4-TMW8014M01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCTTGGGCACCGACGACTGGCGGTGACGGGGGTTCCTAGGGTGTTTCGGCCCGCGGC CAGTATTAGAGTTCGGAACGAAACGCTCGGCGTCGCGGTCCCCGCCCGGAAAGTTTGCTG TGGAGCTGCGACCTCCTGGCCGGCGCGGCCCGGCATGAAGCGGCGCTGAGGAGCCGGCGC CGCTGCCGCCGCCTGAGGAGGAGCCGCAGCACCCTGGGCCACGCCGATGACTACTGCAAA TTGTGGCGCCCCCGACGAGCTCGACTTTAAACTCGTCTTTGGCGAGGACGGGGCGTCGGC GCCGCCACCCCCGGGCTCGCGGCCTGCAGCACATCTTCATTACCTCCACTAGACTGGCCT TTACCAACTCATTTTGGACAGTGTGAACTGAAAATAGAAGTGCAGCCTAAAACTCACCAT CGAGCCCATTATGAAACTGAAGGTAGCCGAGGAGCTGTAAAAGCATCTACTGGGGGACAT CCTGTTGTGAAGCTCCTGGGCTATAGTGAAAAGCCGATAAATCTACAGATGTTTATTGGA ACAGCAGATGATCGATATTTACGGCCTCATGCATTTTACCAAGTCCATCGAATCACTGGG AAGACAGTTGCTACTGCAAGCCAAGAGATAATAATTGCCAGCACAAAGGTTCTGGAAATT CCACTTCTTCCTGAAAACAATATGTCAGCCAGGTATCTTAAAACATATCCCAAAGTGGAC CGCAATTCAGATATAGAACTTCGAAAAGGAGAAACTGATATTGGCAGGAAGAATACTAGA GTACGACTTGTGTTTCGTGTTCACATCCCACAGCCCAATGGAAAAGTCCTTTCTCTGCAG ACAGCATCTATACCTGTTGAATGCTCCCAGCGGTCTGCTCAAGAACTTCCTCATATTGAG AAGTACAGTATCAACAGTTGTTCTGTAAATGGAGGTCATGAAATGATTATTACTGGATCT AATTTTCTTCCAGAATCCAAAATCATCTTTCTTGAAAAAGGACAAGATGGGCGACCTCAG TGGGAAGTAGAAGGGAAAATAATCAAGGAAAAATGTCAAGGGGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCTTGGGCACCGACGACTGGCGGTGACGGGGGTTCCTAGGGTGTTTCGGCCCGCGGC CAGTATTAGAGTTCGGAACGAAACGCTCGGCGTCGCGGTCCCCGCCCGGAAAGTTTGCTG TGGAGCTGCGACCTCCTGGCCGGCGCGGCCCGGCATGAAGCGGCGCTGAGGAGCCGGCGC CGCTGCCGCCGCCTGAGGAGGAGCCGCAGCACCCTGGGCCACGCCGATGACTACTGCAAA TTGTGGCGCCCCCGACGAGCTCGACTTTAAACTCGTCTTTGGCGAGGACGGGGCGTCGGC GCCGCCACCCCCGGGCTCGCGGCCTGCAGCACATCTTCATTACCTCCACTAGACTGGCCT TTACCAACTCATTTTGGACAGTGTGAACTGAAAATAGAAGTGCAGCCTAAAACTCACCAT CGAGCCCATTATGAAACTGAAGGTAGCCGAGGAGCTGTAAAAGCATCTACTGGGGGACAT CCTGTTGTGAAGCTCCTGGGCTATAGTGAAAAGCCGATAAATCTACAGATGTTTATTGGA ACAGCAGATGATCGATATTTACGGCCTCATGCATTTTACCAAGTCCATCGAATCACTGGG AAGACAGTTGCTACTGCAAGCCAAGAGATAATAATTGCCAGCACAAAGGTTCTGGAAATT CCACTTCTTCCTGAAAACAATATGTCAGCCAGGTATCTTAAAACATATCCCAAAGTGGAC CGCAATTCAGATATAGAACTTCGAAAAGGAGAAACTGATATTGGCAGGAAGAATACTAGA GTACGACTTGTGTTTCGTGTTCACATCCCACAGCCCAATGGAAAAGTCCTTTCTCTGCAG ACAGCATCTATACCTGTTGAATGCTCCCAGCGGTCTGCTCAAGAACTTCCTCATATTGAG AAGTACAGTATCAACAGTTGTTCTGTAAATGGAGGTCATGAAATGATTATTACTGGATCT AATTTTCTTCCAGAATCCAAAATCATCTTTCTTGAAAAAGGACAAGATGGGCGACCTCAG TGGGAAGTAGAAGGGAAAATAATCAAGGAAAAATGTCAAGGGGCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 188-329, - strand, RNAz p=0.749358 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 188-329, - strand, RNAz p=0.749358 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-329, gnl|bosTau2|chr18 (14839958-14839628) | |
| 2-329, gnl|Hg17|chr16 (66676854-66677188) | |
| 2-329, gnl|Mm7|chr8 (104658528-104658848) | |
| 491-695, gnl|bosTau2|chr10 (11833551-11833755) | |
| 491-695, gnl|Hg17|chr14 (23912215-23912419) | |
| 491-695, gnl|Mm7|chr14 (50696716-50696920) | |
| 720-865, gnl|bosTau2|chr18 (14782361-14782216) | |
| 720-865, gnl|canFam2|chr5 (84360595-84360386) | |
| 720-865, gnl|danRer3|chrUn (79284279-79284079) | |
| 720-865, gnl|dasNov1|scaffold_65653 (10293-10086) | |
| 720-865, gnl|echTel1|scaffold_238409 (4366-4158) | |
| 720-865, gnl|fr1|chrUn (159337167-159336955) | |
| 720-865, gnl|galGal2|chr11 (3214500-3214312) | |
| 720-865, gnl|hg17|chr16 (66758218-66758427) | |
| 720-865, gnl|Hg17|chr16 (66758274-66758419) | |
| 720-865, gnl|loxAfr1|scaffold_20719 (2220-2430) | |
| 720-865, gnl|mm7|chr8 (104694989-104695199) | |
| 720-865, gnl|Mm7|chr8 (104695046-104695191) | |
| 720-865, gnl|monDom2|scaffold_23 (17833690-17833483) | |
| 720-865, gnl|oryCun1|scaffold_179498 (17994-17785) | |
| 720-865, gnl|panTro1|chr18 (61069270-61069479) | |
| 720-865, gnl|rheMac2|chr20 (66507174-66507383) | |
| 720-865, gnl|rn3|chr19 (35952584-35952792) | |
| 720-865, gnl|tetNig1|chr5 (2654242-2654454) | |
| 720-865, gnl|xenTro1|scaffold_145 (1581858-1582064) | |
| 868-1006, gnl|bosTau2|chr18 (14779577-14779439) | |
| 868-1006, gnl|canFam2|chr5 (84357147-84356990) | |
| 868-1006, gnl|danRer3|chrUn (79283982-79283827) | |
| 868-1006, gnl|dasNov1|scaffold_65653 (7731-7574) | |
| 868-1006, gnl|echTel1|scaffold_175005 (5696-5549) | |
| 868-1006, gnl|fr1|chrUn (159336712-159336564) | |
| 868-1006, gnl|galGal2|chr11 (3213552-3213405) | |
| 868-1006, gnl|hg17|chr16 (66765776-66765933) | |
| 868-1006, gnl|Hg17|chr16 (66765780-66765918) | |
| 868-1006, gnl|loxAfr1|scaffold_9350 (1556-1705) | |
| 868-1006, gnl|mm7|chr8 (104697925-104698082) | |
| 868-1006, gnl|Mm7|chr8 (104697929-104698067) | |
| 868-1006, gnl|monDom2|scaffold_23 (17832987-17832838) | |
| 868-1006, gnl|oryCun1|scaffold_179498 (9800-9643) | |
| 868-1006, gnl|panTro1|chr18 (61076804-61076961) | |
| 868-1006, gnl|rheMac2|chr20 (66514993-66515150) | |
| 868-1006, gnl|rn3|chr19 (35955423-35955580) | |
| 868-1006, gnl|tetNig1|chr5 (2654539-2654692) | |
| 868-1006, gnl|xenTro1|scaffold_145 (1583678-1583834) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-329, gnl|bosTau2|chr18 (14839958-14839628) | |
| 2-329, gnl|Hg17|chr16 (66676854-66677188) | |
| 2-329, gnl|Mm7|chr8 (104658528-104658848) | |
| 491-695, gnl|bosTau2|chr10 (11833551-11833755) | |
| 491-695, gnl|Hg17|chr14 (23912215-23912419) | |
| 491-695, gnl|Mm7|chr14 (50696716-50696920) | |
| 720-865, gnl|bosTau2|chr18 (14782361-14782216) | |
| 720-865, gnl|canFam2|chr5 (84360595-84360386) | |
| 720-865, gnl|danRer3|chrUn (79284279-79284079) | |
| 720-865, gnl|dasNov1|scaffold_65653 (10293-10086) | |
| 720-865, gnl|echTel1|scaffold_238409 (4366-4158) | |
| 720-865, gnl|fr1|chrUn (159337167-159336955) | |
| 720-865, gnl|galGal2|chr11 (3214500-3214312) | |
| 720-865, gnl|hg17|chr16 (66758218-66758427) | |
| 720-865, gnl|Hg17|chr16 (66758274-66758419) | |
| 720-865, gnl|loxAfr1|scaffold_20719 (2220-2430) | |
| 720-865, gnl|mm7|chr8 (104694989-104695199) | |
| 720-865, gnl|Mm7|chr8 (104695046-104695191) | |
| 720-865, gnl|monDom2|scaffold_23 (17833690-17833483) | |
| 720-865, gnl|oryCun1|scaffold_179498 (17994-17785) | |
| 720-865, gnl|panTro1|chr18 (61069270-61069479) | |
| 720-865, gnl|rheMac2|chr20 (66507174-66507383) | |
| 720-865, gnl|rn3|chr19 (35952584-35952792) | |
| 720-865, gnl|tetNig1|chr5 (2654242-2654454) | |
| 720-865, gnl|xenTro1|scaffold_145 (1581858-1582064) | |
| 868-1006, gnl|bosTau2|chr18 (14779577-14779439) | |
| 868-1006, gnl|canFam2|chr5 (84357147-84356990) | |
| 868-1006, gnl|danRer3|chrUn (79283982-79283827) | |
| 868-1006, gnl|dasNov1|scaffold_65653 (7731-7574) | |
| 868-1006, gnl|echTel1|scaffold_175005 (5696-5549) | |
| 868-1006, gnl|fr1|chrUn (159336712-159336564) | |
| 868-1006, gnl|galGal2|chr11 (3213552-3213405) | |
| 868-1006, gnl|hg17|chr16 (66765776-66765933) | |
| 868-1006, gnl|Hg17|chr16 (66765780-66765918) | |
| 868-1006, gnl|loxAfr1|scaffold_9350 (1556-1705) | |
| 868-1006, gnl|mm7|chr8 (104697925-104698082) | |
| 868-1006, gnl|Mm7|chr8 (104697929-104698067) | |
| 868-1006, gnl|monDom2|scaffold_23 (17832987-17832838) | |
| 868-1006, gnl|oryCun1|scaffold_179498 (9800-9643) | |
| 868-1006, gnl|panTro1|chr18 (61076804-61076961) | |
| 868-1006, gnl|rheMac2|chr20 (66514993-66515150) | |
| 868-1006, gnl|rn3|chr19 (35955423-35955580) | |
| 868-1006, gnl|tetNig1|chr5 (2654539-2654692) | |
| 868-1006, gnl|xenTro1|scaffold_145 (1583678-1583834) |