Non-Coding RNA Search

Ss1.1-Pig4-TMW8014N16.3

Sequence:


               
               GGCCCTCTCAGTGGGAAGGCACCTCACTCAGCCTGTGCCCCCTGCAAAGCCTCTGTCCAT
CTTGCTCCACCAAACCCAGACACCCCTCTAAAGAAAAGTGCAGCCTTCATACACAGGGAT
TTCTGTTAGGTCTCCCCACTCTTATACAGTTAGGCAGAATGAGGCCCAAGGAGGAGAAGA
TGCTTGCCCAAGGCCAAGTGGACAGAGGGGGCCCTGGAAGGGCTGGAAGCCACAGCCTCT
CAGGTCACTCAGCATATGTACTGTCCCCACCCTGCAGAGGCCCCAGTCCCTCAGGGTCTC
TAAGCCCCGCAAAGATGGGAAATTTCCACAAACCCTGGGAGACCACACCCGAAACCAGTG
GGGAAGTGAAGAGAAACCTCAGGGAGATGGAAATATACAGAATTAATCTTAGCACCATCT
TCAGCTCTGAAACCACTGGCTGGTTTTAAGAAAATTATAAACAGGTCTTACATAATACAT
GGATTGCTCTATTTGGATTATTTAGATGCCAGAAAAAAAAAAAAAAAAGGTAGTGGAAAG
AAACCAGTTCTGGTTTCATCTTGTTGCTTTATTGAAAAGAAACTTTTCAAAGTCCAAGAG
GGTGGATGAAACCTAACATTTCATATTTCCATCTGCCCCCACCCCGGCACCCTGCAGGTT
TTCATGTGCTAAGTTCAAGGGCTCCTTTGTCTTTGTATCTTATTAAACTGATGATTTTAG
TTATGTGACAAATAGCTAGTACATGGCCCTAGGCACATGGCCTTACTGTCCCCATCTGGG
AAGAATGCAGGTTCTATTTATCATTCAGCCTGGTGGCCCAAGGTGGGGACCTATCTGGAG
TAGAGGGAGCATGCGGGGCAGAGCTGGCCCTCTGTTGCTGTGGGTGATATTGGCCTGGCT
CATCACTAGACACTGATCTTGCTGGTTCAGCCGCAGGCTTTGTCATTCCCTGTTGTCTCC
CCTCAGCCATGAAACTCTCCCCCCGCCATCCTCTAAAGGCGTCTTGTTCTCCTCCCAGTA
GCCTTGCCTTCAATGTAATCTGTTCTCTTAGATGCCTTCCATAGAAGGTTTGGTGTTTGG
CTTTATTTCACTAAATCCTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTCTCAGTGGGAAGGCACCTCACTCAGCCTGTGCCCCCTGCAAAGCCTCTGTCCAT
CTTGCTCCACCAAACCCAGACACCCCTCTAAAGAAAAGTGCAGCCTTCATACACAGGGAT
TTCTGTTAGGTCTCCCCACTCTTATACAGTTAGGCAGAATGAGGCCCAAGGAGGAGAAGA
TGCTTGCCCAAGGCCAAGTGGACAGAGGGGGCCCTGGAAGGGCTGGAAGCCACAGCCTCT
CAGGTCACTCAGCATATGTACTGTCCCCACCCTGCAGAGGCCCCAGTCCCTCAGGGTCTC
TAAGCCCCGCAAAGATGGGAAATTTCCACAAACCCTGGGAGACCACACCCGAAACCAGTG
GGGAAGTGAAGAGAAACCTCAGGGAGATGGAAATATACAGAATTAATCTTAGCACCATCT
TCAGCTCTGAAACCACTGGCTGGTTTTAAGAAAATTATAAACAGGTCTTACATAATACAT
GGATTGCTCTATTTGGATTATTTAGATGCCAGAAAAAAAAAAAAAAAAGGTAGTGGAAAG
AAACCAGTTCTGGTTTCATCTTGTTGCTTTATTGAAAAGAAACTTTTCAAAGTCCAAGAG
GGTGGATGAAACCTAACATTTCATATTTCCATCTGCCCCCACCCCGGCACCCTGCAGGTT
TTCATGTGCTAAGTTCAAGGGCTCCTTTGTCTTTGTATCTTATTAAACTGATGATTTTAG
TTATGTGACAAATAGCTAGTACATGGCCCTAGGCACATGGCCTTACTGTCCCCATCTGGG
AAGAATGCAGGTTCTATTTATCATTCAGCCTGGTGGCCCAAGGTGGGGACCTATCTGGAG
TAGAGGGAGCATGCGGGGCAGAGCTGGCCCTCTGTTGCTGTGGGTGATATTGGCCTGGCT
CATCACTAGACACTGATCTTGCTGGTTCAGCCGCAGGCTTTGTCATTCCCTGTTGTCTCC
CCTCAGCCATGAAACTCTCCCCCCGCCATCCTCTAAAGGCGTCTTGTTCTCCTCCCAGTA
GCCTTGCCTTCAATGTAATCTGTTCTCTTAGATGCCTTCCATAGAAGGTTTGGTGTTTGG
CTTTATTTCACTAAATCCTCCCAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               142-330, - strand, RNAz p=0.999907
               

               
               517-634, - strand, RNAz p=0.740671

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-330, - strand, RNAz p=0.999907
               

               
               517-634, - strand, RNAz p=0.740671

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               548-699, - strand, RNAmicro p=0.99359

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               548-699, - strand, RNAmicro p=0.99359

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-634, gnl|bosTau2|chr21 (38964866-38964228)
               

               
               3-634, gnl|Hg17|chr14 (93921814-93920874)
               


               
               659-1085, gnl|bosTau2|chr21 (38964226-38963764)
               

               
               659-1085, gnl|Hg17|chr14 (93920872-93920402)
               

               
               659-1085, gnl|Mm7|chr12 (101395782-101395150)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-634, gnl|bosTau2|chr21 (38964866-38964228)
               

               
               3-634, gnl|Hg17|chr14 (93921814-93920874)
               


               
               659-1085, gnl|bosTau2|chr21 (38964226-38963764)
               

               
               659-1085, gnl|Hg17|chr14 (93920872-93920402)
               

               
               659-1085, gnl|Mm7|chr12 (101395782-101395150)

	142-330, - strand, RNAz p=0.999907
	517-634, - strand, RNAz p=0.740671

	3-634, gnl\|bosTau2\|chr21 (38964866-38964228)
	3-634, gnl\|Hg17\|chr14 (93921814-93920874)

	659-1085, gnl\|bosTau2\|chr21 (38964226-38963764)
	659-1085, gnl\|Hg17\|chr14 (93920872-93920402)
	659-1085, gnl\|Mm7\|chr12 (101395782-101395150)