Non-Coding RNA Search

Ss1.1-Pig4-TMW8014N20.3

Sequence:


               
               CAAGTGTGAACAGAGACTTTCTTGGATTATGTGTTTCTCAGCCAGACTAAGTACATGCTA
ACGATGGATAAGTGCAAACACATCGGGCGGTTGCAGCTTGCTCACGACCATTCCATCCTC
AACCCTCAGAAATGGCACTGTGTGGACTGTAACACAACAGAGTCCATCTGGGCGTGCCTG
AGCTGTCCCCATGTTGCCTGTGGAAGATACATTGAAGAACACGCACTCAAGCACTTTCAA
GAAAGCAGTCATCCTGTTGCCCTGGAGGTGAATGAGATGTATGTTTTTTGCTACTTTTGT
GATGATTATGTTCTTAATGATAATGCAACTGGAGACCTGAAGTTACTGCGAAGTACGTTA
AGTGCAATCAAAAGTCAGAGTTATCACTGTACTACTCGAAGTGGAAGGGTTTTGCGGTCT
GTGGGTACAAGTGATGATTCGGATTTCTTACACGATGGTGCCCAATCTCTGCTTCAAAAT
GAAGATCAAATGTATACTGCTCTTTGGCACAGGAGGAGGATACTAATGGGTAAAATCTTT
CGAACTTGGTTTGAACAGTCACCCATTGGAAGAAAAAGGCAAGAAGATCAATTTCAGGAA
AAAATAGCAAAAAGAGAAGTGAAGAAAAGACGGCAAGAACTGGAGTATCAAGTTGAAGCA
GAACTGGAAAGTATGCCTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTGTGAACAGAGACTTTCTTGGATTATGTGTTTCTCAGCCAGACTAAGTACATGCTA
ACGATGGATAAGTGCAAACACATCGGGCGGTTGCAGCTTGCTCACGACCATTCCATCCTC
AACCCTCAGAAATGGCACTGTGTGGACTGTAACACAACAGAGTCCATCTGGGCGTGCCTG
AGCTGTCCCCATGTTGCCTGTGGAAGATACATTGAAGAACACGCACTCAAGCACTTTCAA
GAAAGCAGTCATCCTGTTGCCCTGGAGGTGAATGAGATGTATGTTTTTTGCTACTTTTGT
GATGATTATGTTCTTAATGATAATGCAACTGGAGACCTGAAGTTACTGCGAAGTACGTTA
AGTGCAATCAAAAGTCAGAGTTATCACTGTACTACTCGAAGTGGAAGGGTTTTGCGGTCT
GTGGGTACAAGTGATGATTCGGATTTCTTACACGATGGTGCCCAATCTCTGCTTCAAAAT
GAAGATCAAATGTATACTGCTCTTTGGCACAGGAGGAGGATACTAATGGGTAAAATCTTT
CGAACTTGGTTTGAACAGTCACCCATTGGAAGAAAAAGGCAAGAAGATCAATTTCAGGAA
AAAATAGCAAAAAGAGAAGTGAAGAAAAGACGGCAAGAACTGGAGTATCAAGTTGAAGCA
GAACTGGAAAGTATGCCTCCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57530529|ref|NP_001006326.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57530529|ref|NP_001006326.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               204-323, + strand, RNAz p=0.963781

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-323, + strand, RNAz p=0.963781

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               5-680, gnl|bosTau2|chr5 (18342267-18342942)
               

               
               5-680, gnl|Hg17|chr12 (94430550-94429872)
               

               
               5-680, gnl|Mm7|chr10 (93404536-93405214)
               


               
               64-353, gnl|bosTau2|chr23 (15336561-15336272)
               

               
               64-353, gnl|Hg17|chr6 (41882699-41882410)
               

               
               64-353, gnl|Mm7|chr17 (45808612-45808901)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-680, gnl|bosTau2|chr5 (18342267-18342942)
               

               
               5-680, gnl|Hg17|chr12 (94430550-94429872)
               

               
               5-680, gnl|Mm7|chr10 (93404536-93405214)
               


               
               64-353, gnl|bosTau2|chr23 (15336561-15336272)
               

               
               64-353, gnl|Hg17|chr6 (41882699-41882410)
               

               
               64-353, gnl|Mm7|chr17 (45808612-45808901)

	5-680, gnl\|bosTau2\|chr5 (18342267-18342942)
	5-680, gnl\|Hg17\|chr12 (94430550-94429872)
	5-680, gnl\|Mm7\|chr10 (93404536-93405214)

	64-353, gnl\|bosTau2\|chr23 (15336561-15336272)
	64-353, gnl\|Hg17\|chr6 (41882699-41882410)
	64-353, gnl\|Mm7\|chr17 (45808612-45808901)