Non-Coding RNA Search

Ss1.1-Pig4-TMW8014O11.3

Sequence:


               
               CCTCCCTGACCCTCAGCTGAGCAGGAATACCAGGCCTGTGAGAGCAGTCGGGAGGTGGGG
CACGGGATGAATGGACTGTAACCTATGGGACTGGGCTGGGCCCAGGGCCTCTGGCTCCCC
TTTGCCCCGATCTTCCTGGAGAATGGAGCAGAAATGGAGGGGAGGTGGAGAGCGGGAATC
CAAAGCAGGTCCCTCCAAGAGGCATCTTCTCCCGGAGCACAAGATGGCAGCTGGAGTCCT
CAGCGACTGTGAGGGGCCATTCACTGCCTCAGGGGCATCATGGGAAATTCCTGTGACAGC
ATCTGAGCCATCGTGATGATGCCTCTGGGCCTTAGCAATGCCTTCCAGCAGCCCTGGGAA
CCAAGGCCATGTTGTCAGAAGCCCTGAAGACATTCTTAGAAATCAAGTGTCATCATCAGA
CATCAGGCCACATCTCCGAAATCCTCCCAAGCCACCAGAAATTCATCTGACCCCGTGGTC
CTGCCACCAGAAAAGCCCTGCCTCGCTGCCTTGCACCCTTGGGCCTTTACCACCGCACAG
CCCACAGGGGTTTCCCCCTCCTTAACCTCCTGCCCCAGGTGTCTCCCCCTTTGTGAGAAG
ATGGGGAGGTGGGAGGGTGGCGGAGTGTCCTTGAGCAAAAGCCAGTCTGTGCCCCAGCCA
AAGCCACCCTTCAAGGGGCAAAGAAGACTTGGGGCCACCCAGTCTGCTGGCTTCCATGAC
CCCGCTTCTGGGGCAACCCTCTGCTGGTCAAAGGGATCTCGTGGCCCTTGGATGACCTCT
GGGGCAACATCATTAGCTAAGCACAGAGAGGGCAGGACACCAGCCCCTCTCTGCCCTGAG
GTCCCTAAAACAGGACAGGTGGCTCTTGGGGAAAACAGCCAGCTTACTGCTCACACCCCA
GGTAAGGACCCAGCCATATCCAGAAGTATTGGACAACCAGAGCAGGGCTTTGGGGGGTTG
GGGCTGGGAGATGGGGGCGGCTGGTGTAAATAATAATATTTATCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCTGACCCTCAGCTGAGCAGGAATACCAGGCCTGTGAGAGCAGTCGGGAGGTGGGG
CACGGGATGAATGGACTGTAACCTATGGGACTGGGCTGGGCCCAGGGCCTCTGGCTCCCC
TTTGCCCCGATCTTCCTGGAGAATGGAGCAGAAATGGAGGGGAGGTGGAGAGCGGGAATC
CAAAGCAGGTCCCTCCAAGAGGCATCTTCTCCCGGAGCACAAGATGGCAGCTGGAGTCCT
CAGCGACTGTGAGGGGCCATTCACTGCCTCAGGGGCATCATGGGAAATTCCTGTGACAGC
ATCTGAGCCATCGTGATGATGCCTCTGGGCCTTAGCAATGCCTTCCAGCAGCCCTGGGAA
CCAAGGCCATGTTGTCAGAAGCCCTGAAGACATTCTTAGAAATCAAGTGTCATCATCAGA
CATCAGGCCACATCTCCGAAATCCTCCCAAGCCACCAGAAATTCATCTGACCCCGTGGTC
CTGCCACCAGAAAAGCCCTGCCTCGCTGCCTTGCACCCTTGGGCCTTTACCACCGCACAG
CCCACAGGGGTTTCCCCCTCCTTAACCTCCTGCCCCAGGTGTCTCCCCCTTTGTGAGAAG
ATGGGGAGGTGGGAGGGTGGCGGAGTGTCCTTGAGCAAAAGCCAGTCTGTGCCCCAGCCA
AAGCCACCCTTCAAGGGGCAAAGAAGACTTGGGGCCACCCAGTCTGCTGGCTTCCATGAC
CCCGCTTCTGGGGCAACCCTCTGCTGGTCAAAGGGATCTCGTGGCCCTTGGATGACCTCT
GGGGCAACATCATTAGCTAAGCACAGAGAGGGCAGGACACCAGCCCCTCTCTGCCCTGAG
GTCCCTAAAACAGGACAGGTGGCTCTTGGGGAAAACAGCCAGCTTACTGCTCACACCCCA
GGTAAGGACCCAGCCATATCCAGAAGTATTGGACAACCAGAGCAGGGCTTTGGGGGGTTG
GGGCTGGGAGATGGGGGCGGCTGGTGTAAATAATAATATTTATCTTTC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               41-158, - strand, RNAz p=0.732488
               

               
               253-411, - strand, RNAz p=0.971593
               

               
               529-852, - strand, RNAz p=0.999163
               

               
               876-1001, + strand, RNAz p=0.999227

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-158, - strand, RNAz p=0.732488
               

               
               253-411, - strand, RNAz p=0.971593
               

               
               529-852, - strand, RNAz p=0.999163
               

               
               876-1001, + strand, RNAz p=0.999227

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004382, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004382, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-852, gnl|bosTau2|chr19 (42126513-42125672)
               

               
               1-852, gnl|Hg17|chr17 (41268057-41268804)
               


               
               876-1008, gnl|bosTau2|chr19 (42125670-42125539)
               

               
               876-1008, gnl|Hg17|chr17 (41268805-41268967)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr19 (42126513-42125672)
               

               
               1-852, gnl|Hg17|chr17 (41268057-41268804)
               


               
               876-1008, gnl|bosTau2|chr19 (42125670-42125539)
               

               
               876-1008, gnl|Hg17|chr17 (41268805-41268967)

	41-158, - strand, RNAz p=0.732488
	253-411, - strand, RNAz p=0.971593
	529-852, - strand, RNAz p=0.999163
	876-1001, + strand, RNAz p=0.999227

	1-852, gnl\|bosTau2\|chr19 (42126513-42125672)
	1-852, gnl\|Hg17\|chr17 (41268057-41268804)

	876-1008, gnl\|bosTau2\|chr19 (42125670-42125539)
	876-1008, gnl\|Hg17\|chr17 (41268805-41268967)