Non-Coding RNA Search

Ss1.1-Pig4-TMW8015E14.3

Sequence:


               
               GAAAGTCCCAGCAAGAGCGAAGAGCAAGAAGCCCCTGATGGGTCACAGGCCTCATCCAAC
AGTGATCCATTTGGTGAGCCCAGTGGGGAGCCCAGTGGTGATAATATAAGTCCACAGGCC
GGTAGCTAGATAGCACAGGTCTGGGAGCTGGAGCCTCTCTATGCGCAGATCCACAGACCT
AAGAAATAGCATTGACACGGGCTTGCGGCAGGTGCTTCAAGACCGGCATGGAAATCAGCA
TCACGACAGGCTCTCTTGTATTCTTTCACCTCACCTCATCCCACGAAGAAATTCATGATT
GCCCAATGGAACTCGCTTGGAAGAGGGAACTAAGAGTTTTTGGCAACTTACGGCAGATAT
TTATGGCAGCACAAAAACAAACAAACAAAACCACACAAGAGTATAAACAAATCATACCCA
ACATGGAATCACAAGTCAAGCAAATGCTTGCCCAACAAATATTCTAAGCTCCCTTTCCCT
TCTTTGTCATGTTTGAGAATTAATGGGTGTACAAATTTTTGTATTGCTTTTGACTTTTTT
TAGATATTGGTGAAGAAATCTAACTGGGGGGAAAAAAAAAAAAAGCCTTGTATGAAATGA
ATTAACTTGAAATCGCAAGACAAATGAGTGATTGATGATGATTCTTGATTGAGAATGTTG
CCAAAACAACCCTTTAGCTATTCTGCATCCCGGTGGAGAAAGACAGCTTTCGGTTTAACC
TTCGCTCTGTGAGTAGGAAAGGACATCGAATCCCATTGATGAGAAAGATGAAAAATGCAT
CTGATTACCTAGGAAGCTCTAAACTCTAAGGACAATAAAATGATATTTTTTATTTTTCCG
ATATCTTGCTGCTGTGATGCTATGCAGACAAGTGTCTTCTCCATGTGCCATTTTCAAAGA
AAAGTCATTGCCAAATAATTCTGGTACAATCCTAGTAATGTGGTTCTGGTACTTAAAAAA
CCAACTTTCTAATGGAAAAACGGTGACATGAATATTCAGCATAACAAACTGATTCCATGG
TCACAATGGTTCATCTCTATCTCTTTTTGTACATCAGAAAATTCAAATGGAATTTTTATT
TTATACCTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGTCCCAGCAAGAGCGAAGAGCAAGAAGCCCCTGATGGGTCACAGGCCTCATCCAAC
AGTGATCCATTTGGTGAGCCCAGTGGGGAGCCCAGTGGTGATAATATAAGTCCACAGGCC
GGTAGCTAGATAGCACAGGTCTGGGAGCTGGAGCCTCTCTATGCGCAGATCCACAGACCT
AAGAAATAGCATTGACACGGGCTTGCGGCAGGTGCTTCAAGACCGGCATGGAAATCAGCA
TCACGACAGGCTCTCTTGTATTCTTTCACCTCACCTCATCCCACGAAGAAATTCATGATT
GCCCAATGGAACTCGCTTGGAAGAGGGAACTAAGAGTTTTTGGCAACTTACGGCAGATAT
TTATGGCAGCACAAAAACAAACAAACAAAACCACACAAGAGTATAAACAAATCATACCCA
ACATGGAATCACAAGTCAAGCAAATGCTTGCCCAACAAATATTCTAAGCTCCCTTTCCCT
TCTTTGTCATGTTTGAGAATTAATGGGTGTACAAATTTTTGTATTGCTTTTGACTTTTTT
TAGATATTGGTGAAGAAATCTAACTGGGGGGAAAAAAAAAAAAAGCCTTGTATGAAATGA
ATTAACTTGAAATCGCAAGACAAATGAGTGATTGATGATGATTCTTGATTGAGAATGTTG
CCAAAACAACCCTTTAGCTATTCTGCATCCCGGTGGAGAAAGACAGCTTTCGGTTTAACC
TTCGCTCTGTGAGTAGGAAAGGACATCGAATCCCATTGATGAGAAAGATGAAAAATGCAT
CTGATTACCTAGGAAGCTCTAAACTCTAAGGACAATAAAATGATATTTTTTATTTTTCCG
ATATCTTGCTGCTGTGATGCTATGCAGACAAGTGTCTTCTCCATGTGCCATTTTCAAAGA
AAAGTCATTGCCAAATAATTCTGGTACAATCCTAGTAATGTGGTTCTGGTACTTAAAAAA
CCAACTTTCTAATGGAAAAACGGTGACATGAATATTCAGCATAACAAACTGATTCCATGG
TCACAATGGTTCATCTCTATCTCTTTTTGTACATCAGAAAATTCAAATGGAATTTTTATT
TTATACCTTGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               385-475, - strand, RNAz p=0.930767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-475, - strand, RNAz p=0.930767

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               144-475, gnl|bosTau2|chr3 (59230400-59230080)
               

               
               144-475, gnl|Hg17|chr1 (57175823-57175520)
               

               
               144-475, gnl|Mm7|chr4 (104117951-104118310)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-475, gnl|bosTau2|chr3 (59230400-59230080)
               

               
               144-475, gnl|Hg17|chr1 (57175823-57175520)
               

               
               144-475, gnl|Mm7|chr4 (104117951-104118310)

	144-475, gnl\|bosTau2\|chr3 (59230400-59230080)
	144-475, gnl\|Hg17\|chr1 (57175823-57175520)
	144-475, gnl\|Mm7\|chr4 (104117951-104118310)