Non-Coding RNA Search

Ss1.1-Pig4-TMW8015F22.5

Sequence:


               
               CTGGCTCACGGTGGGTGTGTGCCGGGCACCTCCTCCAGCTCGGGGCAAAGCGCTGGGCAC
ACAGCAGGAAGCCGGAGATTTGGGCCAAGTTCTTGGCACAAATGTGCTGGAAAATAGGTC
AACAGCGTAGCAGAGGGTAAGCCTATCAAATCCATTCCCAGCAGCCTTGGGGCAGGGCAG
GACGTGACCCCCAACTCCAGGTGCTGCTTCTGTGCTTCCAGAGGTCAGGGTGGCCGCCGT
CCCTGAAGGGGCCACAGGCTTCACTCCCTGGAGGTAGAGCTCACTGCTGACCCTCCCGGG
GCATCAGAAACACTGCCCACCTTGGCCCTGGCCTGGGCAGCCACGGNGTCTGCTGTAGCC
ACTGAGCCCGCAGCTTGGCCAGACTGCGTGCTTGCTCCTGGGCTCCCTGCCCCAGGGAGG
GCAGTGGGGCCCCACATGGGGCTTTTGTCCTTTTTTCCGACATCAGCTTACTGAGCGGGT
GTCAGGACAGGACTGGGTAGTCCCTAACACAACCGCGTAACTCGGGGGGGGGGCTCATCC
ATGCCACAAGCCTTTATGGTGCACCTACTGTGCACCAAGCTGAGGTCCTGCTCTCTGCAC
GTCCTTCCAGCTGAACCATCAGTGTCCTTGACGGCAGAAGGTACGTCTTCTGCTCTTTTT
CTCATCCCCCCACAGCTGTGACACCAGGATTTACGAAATAAGACCAGACTACTGCCAAAG
GGAAATAAAAGGAATAAAAAAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTCACGGTGGGTGTGTGCCGGGCACCTCCTCCAGCTCGGGGCAAAGCGCTGGGCAC
ACAGCAGGAAGCCGGAGATTTGGGCCAAGTTCTTGGCACAAATGTGCTGGAAAATAGGTC
AACAGCGTAGCAGAGGGTAAGCCTATCAAATCCATTCCCAGCAGCCTTGGGGCAGGGCAG
GACGTGACCCCCAACTCCAGGTGCTGCTTCTGTGCTTCCAGAGGTCAGGGTGGCCGCCGT
CCCTGAAGGGGCCACAGGCTTCACTCCCTGGAGGTAGAGCTCACTGCTGACCCTCCCGGG
GCATCAGAAACACTGCCCACCTTGGCCCTGGCCTGGGCAGCCACGGNGTCTGCTGTAGCC
ACTGAGCCCGCAGCTTGGCCAGACTGCGTGCTTGCTCCTGGGCTCCCTGCCCCAGGGAGG
GCAGTGGGGCCCCACATGGGGCTTTTGTCCTTTTTTCCGACATCAGCTTACTGAGCGGGT
GTCAGGACAGGACTGGGTAGTCCCTAACACAACCGCGTAACTCGGGGGGGGGGCTCATCC
ATGCCACAAGCCTTTATGGTGCACCTACTGTGCACCAAGCTGAGGTCCTGCTCTCTGCAC
GTCCTTCCAGCTGAACCATCAGTGTCCTTGACGGCAGAAGGTACGTCTTCTGCTCTTTTT
CTCATCCCCCCACAGCTGTGACACCAGGATTTACGAAATAAGACCAGACTACTGCCAAAG
GGAAATAAAAGGAATAAAAAAGCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               356-462, - strand, RNAz p=0.564871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-462, - strand, RNAz p=0.564871

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-742, gnl|bosTau2|chr18 (15996904-15996119)
               

               
               12-742, gnl|Hg17|chr16 (88610729-88609039)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-742, gnl|bosTau2|chr18 (15996904-15996119)
               

               
               12-742, gnl|Hg17|chr16 (88610729-88609039)

	12-742, gnl\|bosTau2\|chr18 (15996904-15996119)
	12-742, gnl\|Hg17\|chr16 (88610729-88609039)