Non-Coding RNA Search

Ss1.1-Pig4-TMW8015K24.3

Sequence:


               
               ACTTGCCCAATGTATTTTATGAAGCCCTTAAACTAGATTATTAGTGGCATCTAGTTATAG
AAATAAAGAAATAGATTGTATAAAGAGCATAGAATTTTGAAGATTACTGCAAAGGAGAAT
TCAAAGCATCTAGATTCTAGAACCTGTGTCCTAAATACAGGTTGTGGTTTGCTGAGGAAG
GAGAGGGAACAATTGTTAGTCACCCCTCCAGGTCTGGCACTGAGTGCTCAGCGTGGGATT
TATTGTTTATTCCCCAAAGCCTATGGGGAGGCCTGCACACCTCCTGGCCTCACTTCTACC
AGCTTCCCCCGACAATAGGAATGCCCAGAAATTGATCTCATTCAAGGGGAAAAGTTGTTT
CATTTGGAGACAGAAATAAGAGAAGGACTTAACGCTTCACTTGCTGAATCCTTTGCAGAA
AAACAGCCTTTGCAGCCACCCGTCTGCAGGAACGAATCCTGCTATGGAATATTATCTTCT
CATCCTCTCTGCCATATGTTCAGGCAATCTGTGTTTCACAGTCTATATTAATGCACTGAG
TCAGAGGCAGTGGGGTTCAGTGGGCTAAGCATCAGCCTGGAAAATGAAGGGGTGTGAGTT
CTAATTCTGTCCTTCCCCCCAGCTTGCTGGCTGACCTTCAGGGAGCTTATATCGGCCTCA
TTTTGCCCTCCATTTCCTACCACACATGGCTTACAATGTCTGAGCAAATTAAGGAGAAAT
ACCAACAATGTCAGCATAGGATTTCACAAACATCTTTGAAGCTTTTAAATACCCACCATT
TAAAAACACTGTTCAATGCCCATCAAAGATCCTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGCCCAATGTATTTTATGAAGCCCTTAAACTAGATTATTAGTGGCATCTAGTTATAG
AAATAAAGAAATAGATTGTATAAAGAGCATAGAATTTTGAAGATTACTGCAAAGGAGAAT
TCAAAGCATCTAGATTCTAGAACCTGTGTCCTAAATACAGGTTGTGGTTTGCTGAGGAAG
GAGAGGGAACAATTGTTAGTCACCCCTCCAGGTCTGGCACTGAGTGCTCAGCGTGGGATT
TATTGTTTATTCCCCAAAGCCTATGGGGAGGCCTGCACACCTCCTGGCCTCACTTCTACC
AGCTTCCCCCGACAATAGGAATGCCCAGAAATTGATCTCATTCAAGGGGAAAAGTTGTTT
CATTTGGAGACAGAAATAAGAGAAGGACTTAACGCTTCACTTGCTGAATCCTTTGCAGAA
AAACAGCCTTTGCAGCCACCCGTCTGCAGGAACGAATCCTGCTATGGAATATTATCTTCT
CATCCTCTCTGCCATATGTTCAGGCAATCTGTGTTTCACAGTCTATATTAATGCACTGAG
TCAGAGGCAGTGGGGTTCAGTGGGCTAAGCATCAGCCTGGAAAATGAAGGGGTGTGAGTT
CTAATTCTGTCCTTCCCCCCAGCTTGCTGGCTGACCTTCAGGGAGCTTATATCGGCCTCA
TTTTGCCCTCCATTTCCTACCACACATGGCTTACAATGTCTGAGCAAATTAAGGAGAAAT
ACCAACAATGTCAGCATAGGATTTCACAAACATCTTTGAAGCTTTTAAATACCCACCATT
TAAAAACACTGTTCAATGCCCATCAAAGATCCTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               573-678, + strand, RNAz p=0.568236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               573-678, + strand, RNAz p=0.568236

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr1 (35780903-35780069)
               

               
               1-816, gnl|Hg17|chr3 (117160741-117159910)
               

               
               1-816, gnl|Mm7|chr16 (41734390-41735236)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr1 (35780903-35780069)
               

               
               1-816, gnl|Hg17|chr3 (117160741-117159910)
               

               
               1-816, gnl|Mm7|chr16 (41734390-41735236)

	1-816, gnl\|bosTau2\|chr1 (35780903-35780069)
	1-816, gnl\|Hg17\|chr3 (117160741-117159910)
	1-816, gnl\|Mm7\|chr16 (41734390-41735236)