Non-Coding RNA Search

Ss1.1-Pig4-TMW8016C05.3

Sequence:


               
               GGCAACCTCAGATAAGTCTTCCCAGCGACCATCAGAGAGCACAAACTGTAGCCCTACACG
AAAGAGGTCTTCATCTGAGAGTACTTCTTCAACAGTGAATGGCGTTCCTTCTCGAAGTCC
AAGGTTGGTTGCCTCTGGGGATGACTCTGTGGATAGTCTGCTGCAGCGGATGGTACACCA
TGAGGACCAAGAGCCCCTGGAGAAAAATATTGATGGTGTGATTGCTTCTGCCTCTGTGCC
ACCTTCCTCCAGTCCAGGCCACAGCCACAACAAGGATCGAACCCTGGGAAAACCAGACAG
CCTTCTAGTGCCTGCAGTCCCCAGTGATTCTTGCAGTAGTAGCATCTCTCTCCTTTCTGA
AAAGTTGCCAAGCAGCTGTTCTCCCCATCATATCAAGAGAAGTGTAGTGGAAGCTATGCA
GCGCCAGGCTCGGAAAATGTGCAATTATGACAAAATCTTGGCCACCAAGAAAAACCTGGA
CCATGTCAATAAAATTTTAAAAGCCAAAAAACTTCAAAGACAAGCAAGGACAGGGAATAA
CTTTGTGAAACGCAGACCGGGTCGACCTCGGAAATGTCCCCTCCAGGCTGTGGTATCAAT
GCAAGCATTCCAGGCTGCCCAGTTTGTCAGCCCAGAATTAAATGAAGGCCAAGAAGAAAC
AGCACTGCACCTTGGTCCTGATACAGTTACAGATGTCATTGAAGCTGTGGTTCAGAGTGT
AAACCTGAATCCAGAACATAAAAAGGGATTGAAGAGGAAAAATTGGTTGTTGGAAAAACA
GACCAAGAAAAAAACAGAAGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACCTCAGATAAGTCTTCCCAGCGACCATCAGAGAGCACAAACTGTAGCCCTACACG
AAAGAGGTCTTCATCTGAGAGTACTTCTTCAACAGTGAATGGCGTTCCTTCTCGAAGTCC
AAGGTTGGTTGCCTCTGGGGATGACTCTGTGGATAGTCTGCTGCAGCGGATGGTACACCA
TGAGGACCAAGAGCCCCTGGAGAAAAATATTGATGGTGTGATTGCTTCTGCCTCTGTGCC
ACCTTCCTCCAGTCCAGGCCACAGCCACAACAAGGATCGAACCCTGGGAAAACCAGACAG
CCTTCTAGTGCCTGCAGTCCCCAGTGATTCTTGCAGTAGTAGCATCTCTCTCCTTTCTGA
AAAGTTGCCAAGCAGCTGTTCTCCCCATCATATCAAGAGAAGTGTAGTGGAAGCTATGCA
GCGCCAGGCTCGGAAAATGTGCAATTATGACAAAATCTTGGCCACCAAGAAAAACCTGGA
CCATGTCAATAAAATTTTAAAAGCCAAAAAACTTCAAAGACAAGCAAGGACAGGGAATAA
CTTTGTGAAACGCAGACCGGGTCGACCTCGGAAATGTCCCCTCCAGGCTGTGGTATCAAT
GCAAGCATTCCAGGCTGCCCAGTTTGTCAGCCCAGAATTAAATGAAGGCCAAGAAGAAAC
AGCACTGCACCTTGGTCCTGATACAGTTACAGATGTCATTGAAGCTGTGGTTCAGAGTGT
AAACCTGAATCCAGAACATAAAAAGGGATTGAAGAGGAAAAATTGGTTGTTGGAAAAACA
GACCAAGAAAAAAACAGAAGCCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61840981|ref|XP_617441.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840981|ref|XP_617441.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               453-572, + strand, RNAz p=0.708811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-572, + strand, RNAz p=0.708811

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               94-802, gnl|bosTau2|chr3 (13510846-13510139)
               

               
               94-802, gnl|Hg17|chr1 (152221934-152221227)
               

               
               94-802, gnl|Mm7|chr3 (89120941-89121642)
               


               
               410-573, gnl|bosTau2|chr24 (35764341-35764504)
               

               
               410-573, gnl|Hg17|chr18 (40897083-40897246)
               

               
               410-573, gnl|Mm7|chr18 (79041281-79041118)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-802, gnl|bosTau2|chr3 (13510846-13510139)
               

               
               94-802, gnl|Hg17|chr1 (152221934-152221227)
               

               
               94-802, gnl|Mm7|chr3 (89120941-89121642)
               


               
               410-573, gnl|bosTau2|chr24 (35764341-35764504)
               

               
               410-573, gnl|Hg17|chr18 (40897083-40897246)
               

               
               410-573, gnl|Mm7|chr18 (79041281-79041118)

	94-802, gnl\|bosTau2\|chr3 (13510846-13510139)
	94-802, gnl\|Hg17\|chr1 (152221934-152221227)
	94-802, gnl\|Mm7\|chr3 (89120941-89121642)

	410-573, gnl\|bosTau2\|chr24 (35764341-35764504)
	410-573, gnl\|Hg17\|chr18 (40897083-40897246)
	410-573, gnl\|Mm7\|chr18 (79041281-79041118)