Ss1.1-Pig4-TMW8016D12.3
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CCTAAAGGGGCCCCTTTTTTAAAAAAAAAGGGGGGGGGGGAAATTGGGCCCCCCCCCGGA
AAATTTTAAAAAGGCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTGGGGGCAGAGGCTCTTTATTGCCATGACCACAGGTTTCCCAAAGGGCGGGGGGGCGG
GCGGCTTCCCCTCACGTTCCCAGGAGCAGGCCGGAGAAGCTGGAACTGCTCTGGATGGTG
AGGGCCGCACCGGAACCGTTGTCCACGAAGACGGAGGTGTACTGTCCAGCCGGCGGCTGC
AGCAGCCCCTGCACCTGCACCGTGAAGACCCTGCCACTGCTCTCCAGGCCGGAGATGGCC
TCCAGGGACGTGTGGCGATGACACAGGGACTCGATGCAGACCAGCACTCGCACGGTGTCC
CGGGCCCGCAGCCGAGCCCTGCCCTGCAGCTCCTTGGGGTCCACGTGCAGGCTGGCAGAG
AACTGGAAGATGGCCGTGACCGGGGCCGTGAACCGTCCGGAGGCCAGGCTCAGGCCGGAC
CCCCGCAGGAAGGCACCCTGGGCGGTGGGAGCCTGGAAGCCCTGCAGCTCCGCCAGCGTC
TTCTTGTCCACCAGCACCGGGCCTCTCAGCCGGCAGTGGAAGGCCTCGGCCACCAGCCGC
CTGCCCGTCCCCTCGGGCAGCACGGGGTCCAGCAGCCCCAAGGACCGATGCTCAGTGGCC
TCTTTCAGCATCTTCTGAAACTCCCGCAGCACAGCCTCCTGGTTGACCTCTGACCCGGGG
GGTCCTGGGGGTCCGGGGGGCCCAGGAGGCCCTGGGGGGCCGGAGAGGCCTCGCAACTTC
TTGTCCTGGCCTCGGACCGCTTCT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CCTAAAGGGGCCCCTTTTTTAAAAAAAAAGGGGGGGGGGGAAATTGGGCCCCCCCCCGGA
AAATTTTAAAAAGGCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTGGGGGCAGAGGCTCTTTATTGCCATGACCACAGGTTTCCCAAAGGGCGGGGGGGCGG
GCGGCTTCCCCTCACGTTCCCAGGAGCAGGCCGGAGAAGCTGGAACTGCTCTGGATGGTG
AGGGCCGCACCGGAACCGTTGTCCACGAAGACGGAGGTGTACTGTCCAGCCGGCGGCTGC
AGCAGCCCCTGCACCTGCACCGTGAAGACCCTGCCACTGCTCTCCAGGCCGGAGATGGCC
TCCAGGGACGTGTGGCGATGACACAGGGACTCGATGCAGACCAGCACTCGCACGGTGTCC
CGGGCCCGCAGCCGAGCCCTGCCCTGCAGCTCCTTGGGGTCCACGTGCAGGCTGGCAGAG
AACTGGAAGATGGCCGTGACCGGGGCCGTGAACCGTCCGGAGGCCAGGCTCAGGCCGGAC
CCCCGCAGGAAGGCACCCTGGGCGGTGGGAGCCTGGAAGCCCTGCAGCTCCGCCAGCGTC
TTCTTGTCCACCAGCACCGGGCCTCTCAGCCGGCAGTGGAAGGCCTCGGCCACCAGCCGC
CTGCCCGTCCCCTCGGGCAGCACGGGGTCCAGCAGCCCCAAGGACCGATGCTCAGTGGCC
TCTTTCAGCATCTTCTGAAACTCCCGCAGCACAGCCTCCTGGTTGACCTCTGACCCGGGG
GGTCCTGGGGGTCCGGGGGGCCCAGGAGGCCCTGGGGGGCCGGAGAGGCCTCGCAACTTC
TTGTCCTGGCCTCGGACCGCTTCT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
189-294, gnl|bosTau2|chr16 (37974656-37974551) |
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189-294, gnl|Hg17|chr1 (1217846-1217953) |
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189-294, gnl|Mm7|chr4 (154956047-154955942) |
| |
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461-563, gnl|bosTau2|chr16 (37973758-37973656) |
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461-563, gnl|canFam2|chr5 (59435677-59435798) |
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461-563, gnl|danRer3|chr7 (25091665-25091545) |
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461-563, gnl|echTel1|scaffold_240998 (2074-2197) |
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461-563, gnl|hg17|chr1 (1218741-1218863) |
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461-563, gnl|Hg17|chr1 (1218747-1218849) |
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461-563, gnl|loxAfr1|scaffold_91796 (2612-2489) |
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461-563, gnl|mm7|chr4 (154955252-154955130) |
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461-563, gnl|Mm7|chr4 (154955244-154955142) |
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461-563, gnl|oryCun1|scaffold_64093 (1061-948) |
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461-563, gnl|rn3|chr5 (172815008-172814886) |
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461-563, gnl|tetNig1|chr9 (10310233-10310112) |
| |
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571-723, gnl|bosTau2|chr16 (37973337-37973185) |
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571-723, gnl|Hg17|chr1 (1219258-1219410) |
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571-723, gnl|Mm7|chr4 (154954672-154954520) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
189-294, gnl|bosTau2|chr16 (37974656-37974551) |
|
189-294, gnl|Hg17|chr1 (1217846-1217953) |
|
189-294, gnl|Mm7|chr4 (154956047-154955942) |
| |
|
461-563, gnl|bosTau2|chr16 (37973758-37973656) |
|
461-563, gnl|canFam2|chr5 (59435677-59435798) |
|
461-563, gnl|danRer3|chr7 (25091665-25091545) |
|
461-563, gnl|echTel1|scaffold_240998 (2074-2197) |
|
461-563, gnl|hg17|chr1 (1218741-1218863) |
|
461-563, gnl|Hg17|chr1 (1218747-1218849) |
|
461-563, gnl|loxAfr1|scaffold_91796 (2612-2489) |
|
461-563, gnl|mm7|chr4 (154955252-154955130) |
|
461-563, gnl|Mm7|chr4 (154955244-154955142) |
|
461-563, gnl|oryCun1|scaffold_64093 (1061-948) |
|
461-563, gnl|rn3|chr5 (172815008-172814886) |
|
461-563, gnl|tetNig1|chr9 (10310233-10310112) |
| |
|
571-723, gnl|bosTau2|chr16 (37973337-37973185) |
|
571-723, gnl|Hg17|chr1 (1219258-1219410) |
|
571-723, gnl|Mm7|chr4 (154954672-154954520) |
