Ss1.1-Pig4-TMW8016G21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGGTTTGTGTGAAACTTTGTTTCATAGGTATGCAAAGAAGCCTTTTCACACAGATGT CCTCAGAGATAATATGGATCAGTCCGGAGTTCTCCTCTGGGTAAAAGCAGAACCCTTTAT AGTGGGCGCATTGCAGGTCCCCCCTCCGTCCAAGTTCAGTCTTCACTATCTCAGGAAGAT ATCCAGCTATGTGCGAACCCGGGCCACTGAGGGCGGCTACCCACGCCTGTCCTGGTCTAC ATGGAGGCACATTGCATGTGGGAAGCTGCAGCTGGCTAAGGATCTGGCGTGGCTTTACTT TGAAATATTTGATAGTCTTACAGTGAAGACACCAGAGGAGCGCCTGGAATGGTCTGAGAT TCTGTCCAACTGCATGTCTGGGGATGAAGTTGAAAAGCAAAGAAATCAGCTTTCAGTGGA CACCCTGCAGTTTCTGCTCTTCTTATATATACAGCAGTTAAACAAAGTCTCCCTGAGGAC ATCTTTGATTGGAGAAGAGTGGCCTAGTCCCAGACACAGATCTCAGTCTCCTGACCTGAC TGAAAAATCCAGTTGTCATAATAAGAACTGGAATGATTACAGTCACCAAGCTTTTGTCTG TGATCATCTGTCAGATCTCCTTGAGCTGCTTTTAGATCCAGAACAACTCACTGCATCATT TCATTCGACCCACAGTAGTCTAGTCTCGCGAGAAGCTGTTGTGGCTCTCAGCTTTCTTAT TGAAGGTACTGTGAGTGGAGCCAGGAAGATCTATCCACTTTACGAACTTGCACTGTGGCA ACCACTGCATGCAGAAACTGGCTTCTCAAAGACGTCTAAGGCCTTTTCTTTCTACAAGCT GGAAGCCTGGTTGAGAGCCTCTTTGACTGGGAATCCATTTGGTACATCGGCTTGCCTCAA GTCAGGGAAGAAATTGGCTTGGGCTCACCAAGTTGAAGGCACGACCAAAAGAGCTAAGAT TGCTTGTAACACTCACGTGGCGCCTAGGATGTACCGCATGGTGGTGATGAGCCAGGTTTA CAAGCAGACATTGGCCAAGAGCTCAGATACTCTGGTGGGGGCACATGTGAAGATCCACCG TTGCAATGAGTCTTTCATATACCTGCTCTCTCCCCTACGATCTGTGACAGTTGAGAAGTG CAGGAATAGCACCTTTGTCCTGGGCCCAGTACAGACTGCCCTTCACCTCCACAGCTGTGA CAACGTTAAAGTCATTGCCGTTTGCCATCGTCTGTCCATCTCTTCTACGACAGATTGCAT CTTTCACATTCTGACACCTACGCGCCCACTTATTCTCTCTGGGAACCAGAGAGTAACTTT TGCCCCTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGGTTTGTGTGAAACTTTGTTTCATAGGTATGCAAAGAAGCCTTTTCACACAGATGT CCTCAGAGATAATATGGATCAGTCCGGAGTTCTCCTCTGGGTAAAAGCAGAACCCTTTAT AGTGGGCGCATTGCAGGTCCCCCCTCCGTCCAAGTTCAGTCTTCACTATCTCAGGAAGAT ATCCAGCTATGTGCGAACCCGGGCCACTGAGGGCGGCTACCCACGCCTGTCCTGGTCTAC ATGGAGGCACATTGCATGTGGGAAGCTGCAGCTGGCTAAGGATCTGGCGTGGCTTTACTT TGAAATATTTGATAGTCTTACAGTGAAGACACCAGAGGAGCGCCTGGAATGGTCTGAGAT TCTGTCCAACTGCATGTCTGGGGATGAAGTTGAAAAGCAAAGAAATCAGCTTTCAGTGGA CACCCTGCAGTTTCTGCTCTTCTTATATATACAGCAGTTAAACAAAGTCTCCCTGAGGAC ATCTTTGATTGGAGAAGAGTGGCCTAGTCCCAGACACAGATCTCAGTCTCCTGACCTGAC TGAAAAATCCAGTTGTCATAATAAGAACTGGAATGATTACAGTCACCAAGCTTTTGTCTG TGATCATCTGTCAGATCTCCTTGAGCTGCTTTTAGATCCAGAACAACTCACTGCATCATT TCATTCGACCCACAGTAGTCTAGTCTCGCGAGAAGCTGTTGTGGCTCTCAGCTTTCTTAT TGAAGGTACTGTGAGTGGAGCCAGGAAGATCTATCCACTTTACGAACTTGCACTGTGGCA ACCACTGCATGCAGAAACTGGCTTCTCAAAGACGTCTAAGGCCTTTTCTTTCTACAAGCT GGAAGCCTGGTTGAGAGCCTCTTTGACTGGGAATCCATTTGGTACATCGGCTTGCCTCAA GTCAGGGAAGAAATTGGCTTGGGCTCACCAAGTTGAAGGCACGACCAAAAGAGCTAAGAT TGCTTGTAACACTCACGTGGCGCCTAGGATGTACCGCATGGTGGTGATGAGCCAGGTTTA CAAGCAGACATTGGCCAAGAGCTCAGATACTCTGGTGGGGGCACATGTGAAGATCCACCG TTGCAATGAGTCTTTCATATACCTGCTCTCTCCCCTACGATCTGTGACAGTTGAGAAGTG CAGGAATAGCACCTTTGTCCTGGGCCCAGTACAGACTGCCCTTCACCTCCACAGCTGTGA CAACGTTAAAGTCATTGCCGTTTGCCATCGTCTGTCCATCTCTTCTACGACAGATTGCAT CTTTCACATTCTGACACCTACGCGCCCACTTATTCTCTCTGGGAACCAGAGAGTAACTTT TGCCCCTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 804-932, - strand, RNAz p=0.720109 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 804-932, - strand, RNAz p=0.720109 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-409, gnl|bosTau2|chr1 (54734647-54734236) | |
| 1-409, gnl|Hg17|chr3 (187764894-187764485) | |
| 1-409, gnl|Mm7|chr16 (22503427-22503022) | |
| 564-932, gnl|bosTau2|chr1 (54726981-54726613) | |
| 564-932, gnl|Hg17|chr3 (187757268-187756900) | |
| 564-932, gnl|Mm7|chr16 (22487398-22487030) | |
| 1119-1327, gnl|bosTau2|chr1 (54724519-54724311) | |
| 1119-1327, gnl|canFam2|chr34 (22178381-22178899) | |
| 1119-1327, gnl|canFam2|chr34 (22178390-22178888) | |
| 1119-1327, gnl|danRer3|chr9 (26699985-26699466) | |
| 1119-1327, gnl|danRer3|chr9 (26699971-26699472) | |
| 1119-1327, gnl|echTel1|scaffold_288921 (43024-43534) | |
| 1119-1327, gnl|echTel1|scaffold_288921 (43033-43531) | |
| 1119-1327, gnl|fr1|chrUn (277523014-277523536) | |
| 1119-1327, gnl|fr1|chrUn (277523036-277523530) | |
| 1119-1327, gnl|galGal2|chr9 (9249332-9248819) | |
| 1119-1327, gnl|galGal2|chr9 (9249323-9248825) | |
| 1119-1327, gnl|hg17|chr12 (55060862-55061392) | |
| 1119-1327, gnl|hg17|chr3 (187754736-187755249) | |
| 1119-1327, gnl|Hg17|chr3 (187755243-187755035) | |
| 1119-1327, gnl|mm7|chr16 (22483337-22483848) | |
| 1119-1327, gnl|mm7|chr16 (22483346-22483844) | |
| 1119-1327, gnl|Mm7|chr16 (22483844-22483636) | |
| 1119-1327, gnl|monDom2|scaffold_77 (910144-910660) | |
| 1119-1327, gnl|monDom2|scaffold_77 (910157-910655) | |
| 1119-1327, gnl|oryCun1|scaffold_202439 (396-907) | |
| 1119-1327, gnl|oryCun1|scaffold_202439 (405-903) | |
| 1119-1327, gnl|panTro1|chr10_random (22228543-22228011) | |
| 1119-1327, gnl|panTro1|chr2 (191846968-191847481) | |
| 1119-1327, gnl|rheMac2|chr11 (53463025-53463550) | |
| 1119-1327, gnl|rheMac2|chr2 (100084317-100083803) | |
| 1119-1327, gnl|rn3|chr11 (80462475-80461964) | |
| 1119-1327, gnl|rn3|chr11 (80462466-80461970) | |
| 1119-1327, gnl|tetNig1|chr2 (7021466-7020944) | |
| 1119-1327, gnl|tetNig1|chr2 (7021447-7020950) | |
| 1119-1327, gnl|xenTro1|scaffold_48 (2904615-2905144) | |
| 1119-1327, gnl|xenTro1|scaffold_48 (2904625-2905120) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-409, gnl|bosTau2|chr1 (54734647-54734236) | |
| 1-409, gnl|Hg17|chr3 (187764894-187764485) | |
| 1-409, gnl|Mm7|chr16 (22503427-22503022) | |
| 564-932, gnl|bosTau2|chr1 (54726981-54726613) | |
| 564-932, gnl|Hg17|chr3 (187757268-187756900) | |
| 564-932, gnl|Mm7|chr16 (22487398-22487030) | |
| 1119-1327, gnl|bosTau2|chr1 (54724519-54724311) | |
| 1119-1327, gnl|canFam2|chr34 (22178381-22178899) | |
| 1119-1327, gnl|canFam2|chr34 (22178390-22178888) | |
| 1119-1327, gnl|danRer3|chr9 (26699985-26699466) | |
| 1119-1327, gnl|danRer3|chr9 (26699971-26699472) | |
| 1119-1327, gnl|echTel1|scaffold_288921 (43024-43534) | |
| 1119-1327, gnl|echTel1|scaffold_288921 (43033-43531) | |
| 1119-1327, gnl|fr1|chrUn (277523014-277523536) | |
| 1119-1327, gnl|fr1|chrUn (277523036-277523530) | |
| 1119-1327, gnl|galGal2|chr9 (9249332-9248819) | |
| 1119-1327, gnl|galGal2|chr9 (9249323-9248825) | |
| 1119-1327, gnl|hg17|chr12 (55060862-55061392) | |
| 1119-1327, gnl|hg17|chr3 (187754736-187755249) | |
| 1119-1327, gnl|Hg17|chr3 (187755243-187755035) | |
| 1119-1327, gnl|mm7|chr16 (22483337-22483848) | |
| 1119-1327, gnl|mm7|chr16 (22483346-22483844) | |
| 1119-1327, gnl|Mm7|chr16 (22483844-22483636) | |
| 1119-1327, gnl|monDom2|scaffold_77 (910144-910660) | |
| 1119-1327, gnl|monDom2|scaffold_77 (910157-910655) | |
| 1119-1327, gnl|oryCun1|scaffold_202439 (396-907) | |
| 1119-1327, gnl|oryCun1|scaffold_202439 (405-903) | |
| 1119-1327, gnl|panTro1|chr10_random (22228543-22228011) | |
| 1119-1327, gnl|panTro1|chr2 (191846968-191847481) | |
| 1119-1327, gnl|rheMac2|chr11 (53463025-53463550) | |
| 1119-1327, gnl|rheMac2|chr2 (100084317-100083803) | |
| 1119-1327, gnl|rn3|chr11 (80462475-80461964) | |
| 1119-1327, gnl|rn3|chr11 (80462466-80461970) | |
| 1119-1327, gnl|tetNig1|chr2 (7021466-7020944) | |
| 1119-1327, gnl|tetNig1|chr2 (7021447-7020950) | |
| 1119-1327, gnl|xenTro1|scaffold_48 (2904615-2905144) | |
| 1119-1327, gnl|xenTro1|scaffold_48 (2904625-2905120) |