Non-Coding RNA Search

Ss1.1-Pig4-TMW8016H10.3

Sequence:


               
               CTCTTTTCATCCCTTGATTTGAGAATGAAGAAGTAAGATCAAAACACCTGATAACATCTT
GGTGGTTGTCCCCAAGAATACACCAATTGATGCTTAATATTTGTCAGAGGAGGGGTCACA
ACTTGGCAGGTGAACTTGTACCGCCCGGCAGAGGTTGCGGTGGAAACTAGTGATCTGTTT
GATTGGATTCTGTGTTGCACTGGAAAGGAGGGTCCATCCACGGCATCATTCCTAACAAGT
TCCGTGCCAAGGATATCGTCCGTGTGCTCAGAGCCACTGGGCAGAGCACCTCGGTCTCCA
GGAGATGCCTGTGGCCCCCGACATCCTGAGTGATCATTTGGGAACAGTCCTTCTGGGGTT
GGTTTGAGTTTGGAACCAGTTCTTCTAAGAGCCCTTTGGCCCAGTCTGCCTCATGCTGCT
CTTTTTCCTTCAGGTGGTGTGAAGCCTGAGGGCCATGGAGATGACCACGAAATGGTCAAC
ATGGAATTTACGTGTGACCACTGTCAGGGTTTGATCATAGGTCGGAGGATGAATTGCAAC
GTGTGTGATGACTTTGACCTTTGCTATGGATGCTATGCGGCCAAGAAATATTCCTATGGG
TATGTCTCAAGTGGCCTCTAGTCCAGTAACCTTTTCTCCAGGTGTTTGTTTGCTTTTTAA
AAAAAAATAGATACATAAAACCTTTCATGATAAAAAATTTCAAACATCCCCTCAGTGAAG
TGAGTAGAGTGAAGAGAGTAGTACAATGGTACAATGAATCTTCATGTACCCATTATCCAG
ACTCAGCAATCAGGAAGATTTTCCTTTTTCTTTTGCTTTTTAGGGCCACACTCCATATGC
TGAGGGAGCAGCCCAAGAAATGGCAAAAAAGAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTTCATCCCTTGATTTGAGAATGAAGAAGTAAGATCAAAACACCTGATAACATCTT
GGTGGTTGTCCCCAAGAATACACCAATTGATGCTTAATATTTGTCAGAGGAGGGGTCACA
ACTTGGCAGGTGAACTTGTACCGCCCGGCAGAGGTTGCGGTGGAAACTAGTGATCTGTTT
GATTGGATTCTGTGTTGCACTGGAAAGGAGGGTCCATCCACGGCATCATTCCTAACAAGT
TCCGTGCCAAGGATATCGTCCGTGTGCTCAGAGCCACTGGGCAGAGCACCTCGGTCTCCA
GGAGATGCCTGTGGCCCCCGACATCCTGAGTGATCATTTGGGAACAGTCCTTCTGGGGTT
GGTTTGAGTTTGGAACCAGTTCTTCTAAGAGCCCTTTGGCCCAGTCTGCCTCATGCTGCT
CTTTTTCCTTCAGGTGGTGTGAAGCCTGAGGGCCATGGAGATGACCACGAAATGGTCAAC
ATGGAATTTACGTGTGACCACTGTCAGGGTTTGATCATAGGTCGGAGGATGAATTGCAAC
GTGTGTGATGACTTTGACCTTTGCTATGGATGCTATGCGGCCAAGAAATATTCCTATGGG
TATGTCTCAAGTGGCCTCTAGTCCAGTAACCTTTTCTCCAGGTGTTTGTTTGCTTTTTAA
AAAAAAATAGATACATAAAACCTTTCATGATAAAAAATTTCAAACATCCCCTCAGTGAAG
TGAGTAGAGTGAAGAGAGTAGTACAATGGTACAATGAATCTTCATGTACCCATTATCCAG
ACTCAGCAATCAGGAAGATTTTCCTTTTTCTTTTGCTTTTTAGGGCCACACTCCATATGC
TGAGGGAGCAGCCCAAGAAATGGCAAAAAAGAACAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               430-549, + strand, RNAz p=0.528801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-549, + strand, RNAz p=0.528801

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-805, gnl|bosTau2|chr19 (19214784-19214011)
               

               
               15-805, gnl|Hg17|chr17 (3902573-3901825)
               

               
               15-805, gnl|Mm7|chr11 (72969313-72970296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-805, gnl|bosTau2|chr19 (19214784-19214011)
               

               
               15-805, gnl|Hg17|chr17 (3902573-3901825)
               

               
               15-805, gnl|Mm7|chr11 (72969313-72970296)

	15-805, gnl\|bosTau2\|chr19 (19214784-19214011)
	15-805, gnl\|Hg17\|chr17 (3902573-3901825)
	15-805, gnl\|Mm7\|chr11 (72969313-72970296)