Non-Coding RNA Search

Ss1.1-Pig4-TMW8016I11.3

Sequence:


               
               GCTCACAGAATTCACCTAGCAGATTAAATATACAGCCAGCAAAAGCTGAGTCCAAAGATA
ACAAAGAGATTGCATCCATTTTAAATGAAATGATTCAGTCTGACAACAGCTCTAATGATG
GCAAACCTCTGGATTCTGGGCTTCTGCATAACAATGACAGACTCTCAGATGGGGACAATA
AATACTCTCAAACCAGTCACAAACTGGTGCAGCTTTTGACAACAACTGCAGAGCAGCAGT
TACGGCATGCTGATATAGACACAAGCTGCAAAGAGGTATTGTCTTGCACAGGCACTTCCA
GCTCTGCCTCTGCTAACTCTTCAAGTGGCTCTTGCCCCTCCTCTCATAGCTCACTGACGG
AGCGGCACAAAATTCTCCACCGACTCTTACAGGAGGGTAGCCCCTCGGATATCACAACTT
TGTCTGTGGAGCCTGATAAAAAGGACAGTGCCTCTACTTCTGTGTCAGTGACTGGGCAGG
TACCAGGGAACTCCGGTATAAAACTGGAACTGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACAGAATTCACCTAGCAGATTAAATATACAGCCAGCAAAAGCTGAGTCCAAAGATA
ACAAAGAGATTGCATCCATTTTAAATGAAATGATTCAGTCTGACAACAGCTCTAATGATG
GCAAACCTCTGGATTCTGGGCTTCTGCATAACAATGACAGACTCTCAGATGGGGACAATA
AATACTCTCAAACCAGTCACAAACTGGTGCAGCTTTTGACAACAACTGCAGAGCAGCAGT
TACGGCATGCTGATATAGACACAAGCTGCAAAGAGGTATTGTCTTGCACAGGCACTTCCA
GCTCTGCCTCTGCTAACTCTTCAAGTGGCTCTTGCCCCTCCTCTCATAGCTCACTGACGG
AGCGGCACAAAATTCTCCACCGACTCTTACAGGAGGGTAGCCCCTCGGATATCACAACTT
TGTCTGTGGAGCCTGATAAAAAGGACAGTGCCTCTACTTCTGTGTCAGTGACTGGGCAGG
TACCAGGGAACTCCGGTATAAAACTGGAACTGGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5822492|pdb|2PRG|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5822492|pdb|2PRG|C

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-310, - strand, RNAz p=0.936468

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-310, - strand, RNAz p=0.936468

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr11 (53232359-53232874)
               

               
               1-516, gnl|Hg17|chr2 (24841684-24842199)
               

               
               1-516, gnl|Mm7|chr12 (4221809-4221279)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr11 (53232359-53232874)
               

               
               1-516, gnl|Hg17|chr2 (24841684-24842199)
               

               
               1-516, gnl|Mm7|chr12 (4221809-4221279)

	1-516, gnl\|bosTau2\|chr11 (53232359-53232874)
	1-516, gnl\|Hg17\|chr2 (24841684-24842199)
	1-516, gnl\|Mm7\|chr12 (4221809-4221279)