Non-Coding RNA Search

Ss1.1-Pig4-TMW8017A16.3

Sequence:


               
               GTGAGGACCTTCCAGAAGGAACCATAATCATGTGGTTAGAGGCTTATGACCCTGATTTAG
GTCAGTCTAGTCAAGTGAGGTATAGTCTTCTGGACGCTGGAGAAGGAAACTTTGAGGTGG
ATAAGCTCAGTGGAGCAGTTAGAATCGTACAGCAGTTGGACTTTGAGAAGAAGCAAGTAT
ATAATCTCACTGTGAGGGCCAAAGACAAAGGCAAGCCCATTTCTCTGTCTTCCACTTGCT
ACGTTGAAGTCGAGGTCATCGATGTGAATGAGAACTTACACCCACCCGTGTTTCCCAGCT
TTGTGGAGAAGGGTGCCGTGAAAGAAAATGTCCCGATTGGTTCATCGGTGATGAAGGTAT
CAGCTCATGATGAGGACACAGGAAGAGATGGGGAGATCCACTATTCCATTCGAGATGGTT
CCGGTGTTGGTGTTTTCAAAATAGATGAAGAAACAGGTGTCATAGAGACCTCAGACAGAC
TGGACCGAGAGTCCACCTCCCATTACTGGCTGACCATCTATGCATCCGACCAGGGTGTTG
TACCCCTATCCTCGTTTGTCGAGGTCTACATAGAGGTGGAAGATGTGAATGACAATGCGC
CACAGACGTCAGAGCCTGTTTATTATCCAGAAATAATGGAAAACTCTCCCAAGGATGTAT
CTGTGGTTCAGATCGAGGCGTTTGATCCAGATTCTAGCTCTGATGACAAGCTGACATACA
AAATTACAAGTGGAAATCCACAAGGATTTTTTTCAATAAGTCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGGACCTTCCAGAAGGAACCATAATCATGTGGTTAGAGGCTTATGACCCTGATTTAG
GTCAGTCTAGTCAAGTGAGGTATAGTCTTCTGGACGCTGGAGAAGGAAACTTTGAGGTGG
ATAAGCTCAGTGGAGCAGTTAGAATCGTACAGCAGTTGGACTTTGAGAAGAAGCAAGTAT
ATAATCTCACTGTGAGGGCCAAAGACAAAGGCAAGCCCATTTCTCTGTCTTCCACTTGCT
ACGTTGAAGTCGAGGTCATCGATGTGAATGAGAACTTACACCCACCCGTGTTTCCCAGCT
TTGTGGAGAAGGGTGCCGTGAAAGAAAATGTCCCGATTGGTTCATCGGTGATGAAGGTAT
CAGCTCATGATGAGGACACAGGAAGAGATGGGGAGATCCACTATTCCATTCGAGATGGTT
CCGGTGTTGGTGTTTTCAAAATAGATGAAGAAACAGGTGTCATAGAGACCTCAGACAGAC
TGGACCGAGAGTCCACCTCCCATTACTGGCTGACCATCTATGCATCCGACCAGGGTGTTG
TACCCCTATCCTCGTTTGTCGAGGTCTACATAGAGGTGGAAGATGTGAATGACAATGCGC
CACAGACGTCAGAGCCTGTTTATTATCCAGAAATAATGGAAAACTCTCCCAAGGATGTAT
CTGTGGTTCAGATCGAGGCGTTTGATCCAGATTCTAGCTCTGATGACAAGCTGACATACA
AAATTACAAGTGGAAATCCACAAGGATTTTTTTCAATAAGTCCCAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.994319
               

               
               322-459, + strand, RNAz p=0.626122

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.994319
               

               
               322-459, + strand, RNAz p=0.626122

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-459, gnl|bosTau2|chr27 (5301665-5302121)
               

               
               3-459, gnl|Hg17|chr4 (188003319-188002863)
               

               
               3-459, gnl|Mm7|chr8 (43738583-43739039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-459, gnl|bosTau2|chr27 (5301665-5302121)
               

               
               3-459, gnl|Hg17|chr4 (188003319-188002863)
               

               
               3-459, gnl|Mm7|chr8 (43738583-43739039)

	3-121, - strand, RNAz p=0.994319
	322-459, + strand, RNAz p=0.626122

	3-459, gnl\|bosTau2\|chr27 (5301665-5302121)
	3-459, gnl\|Hg17\|chr4 (188003319-188002863)
	3-459, gnl\|Mm7\|chr8 (43738583-43739039)