Non-Coding RNA Search

Ss1.1-Pig4-TMW8017C01.3

Sequence:


               
               GGCTTTCCCGCCCTGCAGGGTCTCAGAGCCCACCGACATCGCTCACGCCTCCCGGCTTGG
TTCGTTTGAGTAAGGATGAAAGAGGTGTGGAGAAACGATGGGGCCGTTTGCTATCTGCGT
CCTCATTCCTACCGCTAGCTGTTCCCTAAGACGCAAAAGGTCCCTAATACCTCCCTTCAT
TTTCTTGACAAAATGGGACTTTAATCCTAGGAGGATGAGAATCATGCGAAGAGATGTCAA
ACTTAATGCTCTTTGATTTCCACAACAGGGTGTCCCAAGTTCGAGTGAGGGATGGAAGGC
ATATTGCATGACCCTAATGTCTCCCTGGCGTGCTTTCTTTTAGGTATTCGTTCGTCCTTA
CCATTCCGTAACATTCGTGAGCTGACCCTGTGCTGGGGATGCTCCGGTGGCTGAGACAGC
CCCAATCTCCATGCTACGGAACTCACAGTTCAGTGAGGGATATAGACGCATCACCAGGTA
CGGATGGTAGATCATAAGCAGCAGGGGTGGGTCAATCTGGGACACAAGGAGTGTGAAAGG
TCTGTGGAGTGTCCCAGAAAGCATTGGATACTAAGGCTGGAGTCCTGGAGAGCCCACTCA
GCCTTACACATGGCTCTGATAAATGGTAACATTCAAGGACCTTTCATTCAATATGCTTGC
CTCGTTCATCATTCTGTTCTTGTTGAATAAACACGTGGGGAGAAAGACAGTGCGGAGAAA
CTAAAGCTGAGAACCCAGGGAGGAGGATGGAACAGGATGAGTAGAGGATGGGGGTGAGGA
CAGTGCTTGGACCACTGTCAGGCTGAGCAGGTGGGTCATGTGAGGTTGACTGGCAATAGG
GGGGGCATCCAGGGTGATGTCCAGGTCTCTAGGTTCAAAATGGAACAGACTTTGAAATGG
AGAGATGAGAGAAGGATCAGCTTTGGGGGAGATGCTAATGACATATGAGACTCTATGGGT
GTGAAGAGTCAAGGGGACATCCAAGGGTCTTTGGAGTCTCTGGTCCAGGGACAAGGGGAC
TCTGAGGTCACCATTAAAGTAGAAAATTTGGGGGAAAAGCTGAGTTTGTCTTCAAATGCT
TCATAAGGGCTGAGATGCAAAAGAGGCTGCCAGGGACTAATTCGACAAGTGTAGCAGAAG
TACCATACTCCTGCAAGATGGTAATAATAGGGGGAAATGTGTGTGGAGGGAGGGGATGTC
AATGGGAATTTAATTTTTTTGTGTGATTTTCTCTAACTGTAAAAGTGCTCACCAAAATTA
AAGTCTATTAAAACAAAAGTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTCCCGCCCTGCAGGGTCTCAGAGCCCACCGACATCGCTCACGCCTCCCGGCTTGG
TTCGTTTGAGTAAGGATGAAAGAGGTGTGGAGAAACGATGGGGCCGTTTGCTATCTGCGT
CCTCATTCCTACCGCTAGCTGTTCCCTAAGACGCAAAAGGTCCCTAATACCTCCCTTCAT
TTTCTTGACAAAATGGGACTTTAATCCTAGGAGGATGAGAATCATGCGAAGAGATGTCAA
ACTTAATGCTCTTTGATTTCCACAACAGGGTGTCCCAAGTTCGAGTGAGGGATGGAAGGC
ATATTGCATGACCCTAATGTCTCCCTGGCGTGCTTTCTTTTAGGTATTCGTTCGTCCTTA
CCATTCCGTAACATTCGTGAGCTGACCCTGTGCTGGGGATGCTCCGGTGGCTGAGACAGC
CCCAATCTCCATGCTACGGAACTCACAGTTCAGTGAGGGATATAGACGCATCACCAGGTA
CGGATGGTAGATCATAAGCAGCAGGGGTGGGTCAATCTGGGACACAAGGAGTGTGAAAGG
TCTGTGGAGTGTCCCAGAAAGCATTGGATACTAAGGCTGGAGTCCTGGAGAGCCCACTCA
GCCTTACACATGGCTCTGATAAATGGTAACATTCAAGGACCTTTCATTCAATATGCTTGC
CTCGTTCATCATTCTGTTCTTGTTGAATAAACACGTGGGGAGAAAGACAGTGCGGAGAAA
CTAAAGCTGAGAACCCAGGGAGGAGGATGGAACAGGATGAGTAGAGGATGGGGGTGAGGA
CAGTGCTTGGACCACTGTCAGGCTGAGCAGGTGGGTCATGTGAGGTTGACTGGCAATAGG
GGGGGCATCCAGGGTGATGTCCAGGTCTCTAGGTTCAAAATGGAACAGACTTTGAAATGG
AGAGATGAGAGAAGGATCAGCTTTGGGGGAGATGCTAATGACATATGAGACTCTATGGGT
GTGAAGAGTCAAGGGGACATCCAAGGGTCTTTGGAGTCTCTGGTCCAGGGACAAGGGGAC
TCTGAGGTCACCATTAAAGTAGAAAATTTGGGGGAAAAGCTGAGTTTGTCTTCAAATGCT
TCATAAGGGCTGAGATGCAAAAGAGGCTGCCAGGGACTAATTCGACAAGTGTAGCAGAAG
TACCATACTCCTGCAAGATGGTAATAATAGGGGGAAATGTGTGTGGAGGGAGGGGATGTC
AATGGGAATTTAATTTTTTTGTGTGATTTTCTCTAACTGTAAAAGTGCTCACCAAAATTA
AAGTCTATTAAAACAAAAGTACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               142-248, - strand, RNAz p=0.785872
               

               
               479-596, - strand, RNAz p=0.51734

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-248, - strand, RNAz p=0.785872
               

               
               479-596, - strand, RNAz p=0.51734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-635, gnl|bosTau2|chr18 (42238336-42238962)
               

               
               1-635, gnl|Hg17|chr19 (40795425-40794688)
               


               
               680-1121, gnl|bosTau2|chr18 (42239029-42239487)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr18 (42238336-42238962)
               

               
               1-635, gnl|Hg17|chr19 (40795425-40794688)
               


               
               680-1121, gnl|bosTau2|chr18 (42239029-42239487)

	142-248, - strand, RNAz p=0.785872
	479-596, - strand, RNAz p=0.51734

	1-635, gnl\|bosTau2\|chr18 (42238336-42238962)
	1-635, gnl\|Hg17\|chr19 (40795425-40794688)

	680-1121, gnl\|bosTau2\|chr18 (42239029-42239487)