Non-Coding RNA Search

Ss1.1-Pig4-TMW8017D07.3

Sequence:


               
               GGAAGGATCGTCCTTAATGAAAGAGAGATGATGATGCTAAATTTTGGAGGCATTCCTGCA
GTGCGGAGGCAGCCCAGACTTGCTGGAGATGAAGAATAAAAATGTCACACTTTTGTGAGC
AGATGGTCAGAGGGGAGTGAATGCTTAGGGACTCTGCTGATGCCAGAGAAAGGATGAGTT
TTAATAATTCTATTTCTTCATCACTCACTCCTTTTGATGAATTACTTACTCTGATGATGT
TGTTTCAAATTACTGATTTACTCTCCTTTTCTCCAAGGAGACCATGTGCTCTCCCGGGTC
CTACTGTTCCTACATCTAGGTAAATCCTTGGTATATGGTAGGAGCTCTGGGAGTGCAGAT
TCAATACATGAATCTTCAGTCTGTTGATTTCCTCTTCATAGTAAGTTTTAGTAAATTATT
TTACAACTCTCACATTTCTCGCTAAAGAGGAAAAAATACATTTTTACTCTCTCAGGTGGG
TGGTTTCCACTTCTCACCTTCAAGTGTCCTTTTGTACTTTTTCCTTCAGAATACCATTGA
CTATGTGTTTTGAGGAGTTTTGTTTTCAAACTAGACAAAATTTAGCAGTGTGATTCTACT
GTGTCAGGTACTGTGCTGATTGATTGCTAGAGATACAAAGATACATAAGATAGTGGCCCC
ATTGTATCAAATATATCCATGCGTAACACCAGTAACAATTCTGATTAGCAGCTGCCCCTC
CAAGACACTGATAACTTCAGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGATCGTCCTTAATGAAAGAGAGATGATGATGCTAAATTTTGGAGGCATTCCTGCA
GTGCGGAGGCAGCCCAGACTTGCTGGAGATGAAGAATAAAAATGTCACACTTTTGTGAGC
AGATGGTCAGAGGGGAGTGAATGCTTAGGGACTCTGCTGATGCCAGAGAAAGGATGAGTT
TTAATAATTCTATTTCTTCATCACTCACTCCTTTTGATGAATTACTTACTCTGATGATGT
TGTTTCAAATTACTGATTTACTCTCCTTTTCTCCAAGGAGACCATGTGCTCTCCCGGGTC
CTACTGTTCCTACATCTAGGTAAATCCTTGGTATATGGTAGGAGCTCTGGGAGTGCAGAT
TCAATACATGAATCTTCAGTCTGTTGATTTCCTCTTCATAGTAAGTTTTAGTAAATTATT
TTACAACTCTCACATTTCTCGCTAAAGAGGAAAAAATACATTTTTACTCTCTCAGGTGGG
TGGTTTCCACTTCTCACCTTCAAGTGTCCTTTTGTACTTTTTCCTTCAGAATACCATTGA
CTATGTGTTTTGAGGAGTTTTGTTTTCAAACTAGACAAAATTTAGCAGTGTGATTCTACT
GTGTCAGGTACTGTGCTGATTGATTGCTAGAGATACAAAGATACATAAGATAGTGGCCCC
ATTGTATCAAATATATCCATGCGTAACACCAGTAACAATTCTGATTAGCAGCTGCCCCTC
CAAGACACTGATAACTTCAGCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               230-386, - strand, RNAz p=0.86527

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-386, - strand, RNAz p=0.86527

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-681, gnl|bosTau2|chr29 (7647319-7647964)
               

               
               14-681, gnl|Hg17|chr11 (84499304-84498379)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-681, gnl|bosTau2|chr29 (7647319-7647964)
               

               
               14-681, gnl|Hg17|chr11 (84499304-84498379)

	14-681, gnl\|bosTau2\|chr29 (7647319-7647964)
	14-681, gnl\|Hg17\|chr11 (84499304-84498379)