Non-Coding RNA Search

Ss1.1-Pig4-TMW8017E24.5

Sequence:


               
               TGCAGGTGTGGCCCTAAAAAGACAAAAAAATAAAAAAAATAAAAAGTGACTTGTGCTAAA
GAGCAAAGATTAAATAAATGTAATTGCTTCAAACAAAGAACCTCTTTCTTAACTCTCTCC
TCTGCAACTCCTTTAAAATCCATGAAAGCACAGGCTGTGTTGCTTTTCTCAAAGCCTGTG
TATCTAGCTCATAGTAGGCCTTCAACAGATACTTGTTGAGTGACTGACAGAATGAATGAA
TGAATGACTTGAAATGACCTCCCTAACTTTTCACCACTTGAGGATCTCCCTGTACAGCAG
GGGAGACGGTAACTGGCCATTCTCTGCCTCGTTCTTCCATGGAGCCATGGTGCTTTGCAT
TCAGATGTGTTCTCCAACTCCTCCCCCCAAGTGGCTCTGCTTCTTAAATCCAGACATGAA
GAGCATGAGACCTCCTCATCTCCACCCAGGCAAGAGTCTAGTGTTAGCCTCATTCAATGT
CATCATTACAGCATCAACTGATGAGCATCATTCAAATGTCATCATTGTCATCAACTGATG
GAAATATCAGTTTTATAACAACAGCATAGCATCCATCCATTAGGTATGGAGTCCTCTCTG
TCTCCTAGGTATTTGTATTCACAGCTTGATTAAAAGAACACATATTATTCATCGTCAAAC
CACTTACAGGTCCTAGCACTATCTTTTGAACGGAGGATGCACCCAATAAATGCTGAGTCA
TGCAGGAATGACTACTATATGCTGAGTACAGTAACTTCTCAGCTCAGCTTCTGGCTGCAG
AATCTGGCACACAATGAAGTTCTTAAGAAGTTCAAGACTAAAGCTGCTTAAATTTGTCCT
GGTCATCCATTAGGATAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGTGTGGCCCTAAAAAGACAAAAAAATAAAAAAAATAAAAAGTGACTTGTGCTAAA
GAGCAAAGATTAAATAAATGTAATTGCTTCAAACAAAGAACCTCTTTCTTAACTCTCTCC
TCTGCAACTCCTTTAAAATCCATGAAAGCACAGGCTGTGTTGCTTTTCTCAAAGCCTGTG
TATCTAGCTCATAGTAGGCCTTCAACAGATACTTGTTGAGTGACTGACAGAATGAATGAA
TGAATGACTTGAAATGACCTCCCTAACTTTTCACCACTTGAGGATCTCCCTGTACAGCAG
GGGAGACGGTAACTGGCCATTCTCTGCCTCGTTCTTCCATGGAGCCATGGTGCTTTGCAT
TCAGATGTGTTCTCCAACTCCTCCCCCCAAGTGGCTCTGCTTCTTAAATCCAGACATGAA
GAGCATGAGACCTCCTCATCTCCACCCAGGCAAGAGTCTAGTGTTAGCCTCATTCAATGT
CATCATTACAGCATCAACTGATGAGCATCATTCAAATGTCATCATTGTCATCAACTGATG
GAAATATCAGTTTTATAACAACAGCATAGCATCCATCCATTAGGTATGGAGTCCTCTCTG
TCTCCTAGGTATTTGTATTCACAGCTTGATTAAAAGAACACATATTATTCATCGTCAAAC
CACTTACAGGTCCTAGCACTATCTTTTGAACGGAGGATGCACCCAATAAATGCTGAGTCA
TGCAGGAATGACTACTATATGCTGAGTACAGTAACTTCTCAGCTCAGCTTCTGGCTGCAG
AATCTGGCACACAATGAAGTTCTTAAGAAGTTCAAGACTAAAGCTGCTTAAATTTGTCCT
GGTCATCCATTAGGATAAGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               745-864, + strand, RNAz p=0.935352

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               745-864, + strand, RNAz p=0.935352

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               37-483, gnl|bosTau2|chr11 (49218190-49217765)
               


               
               557-864, gnl|bosTau2|chr11 (49217737-49217425)
               

               
               557-864, gnl|Hg17|chr2 (69260424-69260736)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-483, gnl|bosTau2|chr11 (49218190-49217765)
               


               
               557-864, gnl|bosTau2|chr11 (49217737-49217425)
               

               
               557-864, gnl|Hg17|chr2 (69260424-69260736)

	37-483, gnl\|bosTau2\|chr11 (49218190-49217765)

	557-864, gnl\|bosTau2\|chr11 (49217737-49217425)
	557-864, gnl\|Hg17\|chr2 (69260424-69260736)