Non-Coding RNA Search

Ss1.1-Pig4-TMW8017J10.3

Sequence:


               
               CCGCGCTTGGGCAAGACTGTCTAGCCTTGCATTCGGAGAAAGCCTCGCAAGAAACGGTCC
GTTCCTCCGTTGCAGAAGAGAACGGGGACGTCAAAGAGCTGCATCCGTGCAAATACTGTA
AGAAGGTTTTTGGGACTCACACCAACATGCGGCGGCACCAGCGCCGAGTGCACGAGCGCC
ATCTCATCCCCAAGGGCGTGCGGCGGAAAGGCGGCCTCCTGGAGGAGCCGCGGCCCCCGG
CCGGGCAGGCGCCCCCTGCCCAGAGCGTCTACGTGCCCAGCACGGAGCCGGAGGAGGAGG
GGGAGGCGGACGACGTGTACATCATGGACATCTCCAGCAACATCTCCGAAAACCTCAATT
ACTACATCGACGGCAAGATTCCCACCAGCAGCAGCACGAGTAACTGTGACGTCATTGAGA
TGGAATCCGGCCCCGCAGACGTGTACGGCATAAACTGTCTGCTGGCGCCCGTTACCGTGG
AAATTACTCAAAACATAAAGACCACACAGGCCCCTGTCACAGATGATCTTCCTAAGGAGC
CTTCCAGCAGCACAAACAGTGAGTCCAAGAAGCGCAGAACCACTAGTCCTCCTGTGTTAC
CCAAGATCAAAGCTGAAGCCGAGTCAGAGCCGGTAGCTGCCTCCTGCTCCTTGAGCCTGC
CCCTCAGCATAGCGACGACAGAGGCCGTGTCCTTCCACAAAGAGAAAAACGTGTATTTGT
CATCGAAGCTCAAACAGCTTCTTCAAACCCAGGAGAAACTAACTCCCCCCGCAGGGATTT
CAGCCGCTGAGATACCCAAGTTGGGCCCTGTCTGCGTGTCCGCTCCTGCCTCGATGCTGC
CTGTGACCTCGAGCAGGTTTAAGAGGCGGACCAGCTCTCCGCCCAGCTCTCCCCAGCACA
GTCCTGCCCTCCGAGACTTCGGAAAGCCAGGTGACGGGAAAGCCACGTGGACGGAGGCAG
TTCTAAGCTCCAAAAAGCCCAAATTGGAAAGTCATAGCAACTCCCCAGCCTGGAGTTTGT
CTGGGAGAGACGAGAGGGAAACTGGGAGCCCGCCAGGCTTTGATGACTATAAAGTACCTA
AAGAGTGGGCAGCTAGTTCTTCCTTTAGCAATGTGTGCAACCAGCAGCCGCTGGATTTAT
CGAGCGGTGTAAAACAGAAGGCTGAGGGTACGGGCAAGATGCCGGTCCAGTGGGAGTCTG
TGTTGGATCTCAGCGTGCATAAAAAGCCTTGCAGTGACTCCGAAGGCAAGGAGTTCAAAG
AGAATCACTTGGTGCAGCCAGCCTGCAATGCCGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGCTTGGGCAAGACTGTCTAGCCTTGCATTCGGAGAAAGCCTCGCAAGAAACGGTCC
GTTCCTCCGTTGCAGAAGAGAACGGGGACGTCAAAGAGCTGCATCCGTGCAAATACTGTA
AGAAGGTTTTTGGGACTCACACCAACATGCGGCGGCACCAGCGCCGAGTGCACGAGCGCC
ATCTCATCCCCAAGGGCGTGCGGCGGAAAGGCGGCCTCCTGGAGGAGCCGCGGCCCCCGG
CCGGGCAGGCGCCCCCTGCCCAGAGCGTCTACGTGCCCAGCACGGAGCCGGAGGAGGAGG
GGGAGGCGGACGACGTGTACATCATGGACATCTCCAGCAACATCTCCGAAAACCTCAATT
ACTACATCGACGGCAAGATTCCCACCAGCAGCAGCACGAGTAACTGTGACGTCATTGAGA
TGGAATCCGGCCCCGCAGACGTGTACGGCATAAACTGTCTGCTGGCGCCCGTTACCGTGG
AAATTACTCAAAACATAAAGACCACACAGGCCCCTGTCACAGATGATCTTCCTAAGGAGC
CTTCCAGCAGCACAAACAGTGAGTCCAAGAAGCGCAGAACCACTAGTCCTCCTGTGTTAC
CCAAGATCAAAGCTGAAGCCGAGTCAGAGCCGGTAGCTGCCTCCTGCTCCTTGAGCCTGC
CCCTCAGCATAGCGACGACAGAGGCCGTGTCCTTCCACAAAGAGAAAAACGTGTATTTGT
CATCGAAGCTCAAACAGCTTCTTCAAACCCAGGAGAAACTAACTCCCCCCGCAGGGATTT
CAGCCGCTGAGATACCCAAGTTGGGCCCTGTCTGCGTGTCCGCTCCTGCCTCGATGCTGC
CTGTGACCTCGAGCAGGTTTAAGAGGCGGACCAGCTCTCCGCCCAGCTCTCCCCAGCACA
GTCCTGCCCTCCGAGACTTCGGAAAGCCAGGTGACGGGAAAGCCACGTGGACGGAGGCAG
TTCTAAGCTCCAAAAAGCCCAAATTGGAAAGTCATAGCAACTCCCCAGCCTGGAGTTTGT
CTGGGAGAGACGAGAGGGAAACTGGGAGCCCGCCAGGCTTTGATGACTATAAAGTACCTA
AAGAGTGGGCAGCTAGTTCTTCCTTTAGCAATGTGTGCAACCAGCAGCCGCTGGATTTAT
CGAGCGGTGTAAAACAGAAGGCTGAGGGTACGGGCAAGATGCCGGTCCAGTGGGAGTCTG
TGTTGGATCTCAGCGTGCATAAAAAGCCTTGCAGTGACTCCGAAGGCAAGGAGTTCAAAG
AGAATCACTTGGTGCAGCCAGCCTGCAATGCCGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1000-1239, - strand, RNAz p=0.839123

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1000-1239, - strand, RNAz p=0.839123

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1031-1107, + strand, RNAmicro p=0.999964

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1031-1107, + strand, RNAmicro p=0.999964

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1291, gnl|bosTau2|chr16 (40177452-40176162)
               

               
               1-1291, gnl|Hg17|chr1 (13850942-13852226)
               

               
               1-1291, gnl|Mm7|chr4 (142547820-142546542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1291, gnl|bosTau2|chr16 (40177452-40176162)
               

               
               1-1291, gnl|Hg17|chr1 (13850942-13852226)
               

               
               1-1291, gnl|Mm7|chr4 (142547820-142546542)

	1-1291, gnl\|bosTau2\|chr16 (40177452-40176162)
	1-1291, gnl\|Hg17\|chr1 (13850942-13852226)
	1-1291, gnl\|Mm7\|chr4 (142547820-142546542)