Non-Coding RNA Search

Ss1.1-Pig4-TMW8017M07.3

Sequence:


               
               TGCCTTTTTCCCTTGTTTTCAGAATGGTTCCACTTAGGAAACAAGCTTTTTTCCCAAATT
TGCCGATGTCTGCAAATAGTATTCTGCCCAGAAGGGAAGAAAAGAGCTAGTATGATTCAT
TTGAAGCAAATCTCCAAGAATATCAAAATGGAGTATTTATGGCTGTGAGAGGATTGATTT
ATCTGCAGAAACAGGTACCACTTCTCCCCCTAAAACCAGGGTCATCCCTTGAAATAGGCT
GGCTGGGCAACTGCCTCCTGAAAAAGAGATGAGGACCTCTGACCAGCTCCCACCAGCCCC
CAAGTAGCTCCCCACACCCCGTGAGCCTCGCATCCTAGCTGGTCCGAAATTCCTGCCCAT
GGGGTCAATCCTATGTTTCAAAAATACAGATAACCTGCTTAAAATGAATTTACCTGTGAG
AGGAAAGTGTGTGCAACTTCCGTTAGCCTCTTTTAGGGACCTTAAATGGTCAGGTAAGCT
CCTGCACCCCTTTTAAGGATGGAAAGTAGTCCAAGAGGCGATTTTCAATTCGTGCAAAGC
GTCTGGCCGACAGAGGTTTAAACTGTAAAGAAAGGACCAAGAGCTGGGAGAAAGGACCCT
TTGAGGAGGGGGGCCTGATGGGGCCTCCGTGCAGGAGGAGTTGGCTGTGGGCAGAGGGAT
GGTAGCCTGGCACTTGGTGACGGTGGTGGGCCTAGAAAAGCAAAGAGGAGACGGAATAGT
GGGTATAAACCCTACAAACACTATAGTCTTGGCCTACTCATTCTATGAAAATGTGGTGAT
GAAGCTTTGTTGGAGAAAGTTTGTTTTCAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTTTTTCCCTTGTTTTCAGAATGGTTCCACTTAGGAAACAAGCTTTTTTCCCAAATT
TGCCGATGTCTGCAAATAGTATTCTGCCCAGAAGGGAAGAAAAGAGCTAGTATGATTCAT
TTGAAGCAAATCTCCAAGAATATCAAAATGGAGTATTTATGGCTGTGAGAGGATTGATTT
ATCTGCAGAAACAGGTACCACTTCTCCCCCTAAAACCAGGGTCATCCCTTGAAATAGGCT
GGCTGGGCAACTGCCTCCTGAAAAAGAGATGAGGACCTCTGACCAGCTCCCACCAGCCCC
CAAGTAGCTCCCCACACCCCGTGAGCCTCGCATCCTAGCTGGTCCGAAATTCCTGCCCAT
GGGGTCAATCCTATGTTTCAAAAATACAGATAACCTGCTTAAAATGAATTTACCTGTGAG
AGGAAAGTGTGTGCAACTTCCGTTAGCCTCTTTTAGGGACCTTAAATGGTCAGGTAAGCT
CCTGCACCCCTTTTAAGGATGGAAAGTAGTCCAAGAGGCGATTTTCAATTCGTGCAAAGC
GTCTGGCCGACAGAGGTTTAAACTGTAAAGAAAGGACCAAGAGCTGGGAGAAAGGACCCT
TTGAGGAGGGGGGCCTGATGGGGCCTCCGTGCAGGAGGAGTTGGCTGTGGGCAGAGGGAT
GGTAGCCTGGCACTTGGTGACGGTGGTGGGCCTAGAAAAGCAAAGAGGAGACGGAATAGT
GGGTATAAACCCTACAAACACTATAGTCTTGGCCTACTCATTCTATGAAAATGTGGTGAT
GAAGCTTTGTTGGAGAAAGTTTGTTTTCAAGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-147, - strand, RNAz p=0.996311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-147, - strand, RNAz p=0.996311

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-690, gnl|bosTau2|chr27 (9219841-9220532)
               

               
               1-690, gnl|Hg17|chr4 (187031786-187031076)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-690, gnl|bosTau2|chr27 (9219841-9220532)
               

               
               1-690, gnl|Hg17|chr4 (187031786-187031076)

	1-690, gnl\|bosTau2\|chr27 (9219841-9220532)
	1-690, gnl\|Hg17\|chr4 (187031786-187031076)