Non-Coding RNA Search

Ss1.1-Pig4-TMW8018D03.5

Sequence:


               
               GAAATAAATTAGGAGCTCTTTAGTGCGTATATTCTTTTTGAGAATCAAATAGTGGTCTTC
TTTTGCTAACATAAAAATTAGTAAACTGCAGTATAGAAATCAGAATGAAAGTAAGTGAAA
AGTTTTTTCAGAAGGATCTAAGGAAAACATAAATGAAGCAGGTACAGGTGCAGTTGACCA
AATTTGCAATGAAAATGGTGTTATATTTCTATAAGAGGAATGTGTAGATTAGTGGGTTGT
TGGGAACTTGAGCAGTATAAGAAGTCCAATCTCTTGCTTTTGAGTTCTTCCCAAAGTAAA
TTGCATAGACTTCTTCAAGAAGTTTGAGATCTCATTTAAAAGCCTTTAAAGTTGTATGAT
TTTACTTTCTGTAACTTCTAATGTGCTAATTGCATTTTCAGAACAGAACCATTAATAAGA
GAAAGGAGTTAGTTTTGAGGTAACTGCATTCATTAGGAGCTGAAATTAAATGCTAAAAGT
GATTAATTTGGTTAGAAGTTCTGCAACATTATATCTATATGCGTGTGTGTGTGTATGTGT
ATAAGTCCACACACACGTGTGTGTGTGTATATGTATATAGGTACACACAAACACAAATTC
ATATTTTCTACAAAAGTTGAGAATTCCAAGAGCTTGTACTTGTAGGTAACTGGTTATATG
CCTGTATCTTCATGTTTTCCCTCCTCTAATATTGGTGATAATTAATTTTTTTGATTATAC
ATGAATACTTTTTCACCTATCTGTAGATCTGTCAACCAAATTTGTAGTTAAAAGAGATTT
GACTTGAAAAAAGTCTGTGGTAGCATTTCAGTTTATTTTTTATCATATTGCCTTCATAAC
TTCACTTTGGGCGTGGCTTAGATCAGAACTCCCTGAAAAGCACAAATACCTTTTTTTTTA
TCATTAACATAATTGTATGAAGCTTCTGTTCACTTATAATCTGCCAGCTCCATTTGGAGA
ATGAGTCTTCTTACTCATCATTAATCAGCTTTCTTGCCTCAGAATCCAGATTGATGTTTA
TCTACAGTTGTCTCTGGGTATTACATTTTCAAAGCTCCTTTGTAACACCTCTGTCCCCTG
TTATTCAAAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAAATTAGGAGCTCTTTAGTGCGTATATTCTTTTTGAGAATCAAATAGTGGTCTTC
TTTTGCTAACATAAAAATTAGTAAACTGCAGTATAGAAATCAGAATGAAAGTAAGTGAAA
AGTTTTTTCAGAAGGATCTAAGGAAAACATAAATGAAGCAGGTACAGGTGCAGTTGACCA
AATTTGCAATGAAAATGGTGTTATATTTCTATAAGAGGAATGTGTAGATTAGTGGGTTGT
TGGGAACTTGAGCAGTATAAGAAGTCCAATCTCTTGCTTTTGAGTTCTTCCCAAAGTAAA
TTGCATAGACTTCTTCAAGAAGTTTGAGATCTCATTTAAAAGCCTTTAAAGTTGTATGAT
TTTACTTTCTGTAACTTCTAATGTGCTAATTGCATTTTCAGAACAGAACCATTAATAAGA
GAAAGGAGTTAGTTTTGAGGTAACTGCATTCATTAGGAGCTGAAATTAAATGCTAAAAGT
GATTAATTTGGTTAGAAGTTCTGCAACATTATATCTATATGCGTGTGTGTGTGTATGTGT
ATAAGTCCACACACACGTGTGTGTGTGTATATGTATATAGGTACACACAAACACAAATTC
ATATTTTCTACAAAAGTTGAGAATTCCAAGAGCTTGTACTTGTAGGTAACTGGTTATATG
CCTGTATCTTCATGTTTTCCCTCCTCTAATATTGGTGATAATTAATTTTTTTGATTATAC
ATGAATACTTTTTCACCTATCTGTAGATCTGTCAACCAAATTTGTAGTTAAAAGAGATTT
GACTTGAAAAAAGTCTGTGGTAGCATTTCAGTTTATTTTTTATCATATTGCCTTCATAAC
TTCACTTTGGGCGTGGCTTAGATCAGAACTCCCTGAAAAGCACAAATACCTTTTTTTTTA
TCATTAACATAATTGTATGAAGCTTCTGTTCACTTATAATCTGCCAGCTCCATTTGGAGA
ATGAGTCTTCTTACTCATCATTAATCAGCTTTCTTGCCTCAGAATCCAGATTGATGTTTA
TCTACAGTTGTCTCTGGGTATTACATTTTCAAAGCTCCTTTGTAACACCTCTGTCCCCTG
TTATTCAAAGCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               633-748, + strand, RNAz p=0.992176

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               633-748, + strand, RNAz p=0.992176

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-526, gnl|bosTau2|chr2 (14133135-14132611)
               

               
               9-526, gnl|Hg17|chr2 (174764243-174763726)
               


               
               593-791, gnl|bosTau2|chr2 (14132610-14132406)
               

               
               593-791, gnl|Hg17|chr2 (174763725-174763536)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-526, gnl|bosTau2|chr2 (14133135-14132611)
               

               
               9-526, gnl|Hg17|chr2 (174764243-174763726)
               


               
               593-791, gnl|bosTau2|chr2 (14132610-14132406)
               

               
               593-791, gnl|Hg17|chr2 (174763725-174763536)

	9-526, gnl\|bosTau2\|chr2 (14133135-14132611)
	9-526, gnl\|Hg17\|chr2 (174764243-174763726)

	593-791, gnl\|bosTau2\|chr2 (14132610-14132406)
	593-791, gnl\|Hg17\|chr2 (174763725-174763536)