Non-Coding RNA Search

Ss1.1-Pig4-TMW8018D17.3

Sequence:


               
               TTTTGGCAGGCTCTTCCTCCTCCTCCTCCTCGTCCTCGTCTTCATCTTCCTCATCCTCCT
CCTCCTCCTCGTCCTCCTCTTCATCCTCGTCCTCATCATCATCCTCTTCATCCTCCTCGT
CCTCCTCGTCCTCCTCTTCATCTTCATCCTCAGCAGTGCTCTTGGCCTTCACAGGAACAG
CTTTGACCCAGTGAGGGAGCAGAGGATGGCTGAAATGGAGGACGGGGTGGTACCTGCATT
CTAGAACTCACGAGAGGCTCCTGATCGGAAATGGCGGGAGTGATGGAAGGTGAGAGTCAT
GGCTGAAGACAGAAATGAGATGAGCAGCTGAAGGTCTGCATTCTCCTGTTCCCTGATCCT
TCTCTTAACACCATCACCCCATTCCCTGTACCTGCAGCCATAAATTTATCCCAATGGACA
AAAAGTATGGTGGCCTCTTTTCCGAAGGAGATAAACAGAACTTATGGTGAGAACCAGGCC
AGCATCTGCCACGCCCAGAGGGAAGGCTCCCACTTCCAGCCTTCATATACCCACACCGCC
AGCCCCCTGCCAGTTGATAAACTATAGTCATACACTCAGATTTCCCGCCCATCTAGCCCA
TTCCCCATGCTCAAATACCTGAGAAAAACTTGTAGCAGCAAAGAGAAAAACCAAGATATA
TAAATATAAGAAATTTAAAATGACTGAAGACAATATTAAAAATAAGACTATATGTGAGGA
AGAAACAGCAAAAAAGGGTTTTTAGAAAGTAAAAATATGACTATTGAAATAAAAGTATTC
AGTAGGAGGGTCAAGAAAATCTCTTAAGAAATTCCCATTGTGGCTCAGTGTAACTAACCC
AACTAGTATCTATGAAGAAATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGCAGGCTCTTCCTCCTCCTCCTCCTCGTCCTCGTCTTCATCTTCCTCATCCTCCT
CCTCCTCCTCGTCCTCCTCTTCATCCTCGTCCTCATCATCATCCTCTTCATCCTCCTCGT
CCTCCTCGTCCTCCTCTTCATCTTCATCCTCAGCAGTGCTCTTGGCCTTCACAGGAACAG
CTTTGACCCAGTGAGGGAGCAGAGGATGGCTGAAATGGAGGACGGGGTGGTACCTGCATT
CTAGAACTCACGAGAGGCTCCTGATCGGAAATGGCGGGAGTGATGGAAGGTGAGAGTCAT
GGCTGAAGACAGAAATGAGATGAGCAGCTGAAGGTCTGCATTCTCCTGTTCCCTGATCCT
TCTCTTAACACCATCACCCCATTCCCTGTACCTGCAGCCATAAATTTATCCCAATGGACA
AAAAGTATGGTGGCCTCTTTTCCGAAGGAGATAAACAGAACTTATGGTGAGAACCAGGCC
AGCATCTGCCACGCCCAGAGGGAAGGCTCCCACTTCCAGCCTTCATATACCCACACCGCC
AGCCCCCTGCCAGTTGATAAACTATAGTCATACACTCAGATTTCCCGCCCATCTAGCCCA
TTCCCCATGCTCAAATACCTGAGAAAAACTTGTAGCAGCAAAGAGAAAAACCAAGATATA
TAAATATAAGAAATTTAAAATGACTGAAGACAATATTAAAAATAAGACTATATGTGAGGA
AGAAACAGCAAAAAAGGGTTTTTAGAAAGTAAAAATATGACTATTGAAATAAAAGTATTC
AGTAGGAGGGTCAAGAAAATCTCTTAAGAAATTCCCATTGTGGCTCAGTGTAACTAACCC
AACTAGTATCTATGAAGAAATGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               217-403, + strand, RNAz p=0.95246

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-403, + strand, RNAz p=0.95246

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               178-434, gnl|bosTau2|chr13 (22136526-22136792)
               

               
               178-434, gnl|Hg17|chr20 (18314552-18314811)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-434, gnl|bosTau2|chr13 (22136526-22136792)
               

               
               178-434, gnl|Hg17|chr20 (18314552-18314811)

	178-434, gnl\|bosTau2\|chr13 (22136526-22136792)
	178-434, gnl\|Hg17\|chr20 (18314552-18314811)