Non-Coding RNA Search

Ss1.1-Pig4-TMW8018I13.3

Sequence:


               
               GCCAGCTGCACAGACAGTCAGATCTCAGCCATGTGGCCCCCATCCTCTGTGTCCGAGAGA
CAGAGGACAGTTTCCGCTCCCCAGGTCCTTGTCTGGCGCTGCCCGGCTCCGCCATCAGCA
GCCCGCTGGAAGTGATGCAGCTGTGGCTGCTGTCCAACTGTCCTCTGCCCCAGGGCAGCA
GGATGTTCAAATTCTTTCCCGTTTCCTTTCATGCCCGCTCCAGGGAGCTGGCTTGGTGGA
AGCTGACAGCTCAGCTGTTTGGTGTGTGGGTTGTTTTCTTCCTTAGTGAACCTTGTTTGC
GTAACATCTCGGGGTGTCTATATAAGGTAAGGTCAGCTTCAGCCCCGCCAACCGCCCCGC
AATTGAGCGGTGCTCTGGGGCAATTTCCTGCTGTTTCCCTCCCCCCGTCTTTGGTCTTGC
TCTGAAGTTCATTGTTGGATGGAGATTGTGAAAGGGTTACTTCCCTCTTTTTTTCTTTCT
GTTGGCCAGCAGATATGTATCGAGTGCCTGCGCTGAGCCTAGCACGGTCGTTGTTTCTGG
GGCTTGGACAAGACTTGGACGGATATGAAAGTAGCTGAAAAGAAAAGATCAAAAGGACAG
GCGCCCAAAGGCTTGCTTAGGTGTTACTTAGGGAGTTTACTGGGTTATTGAAGTGGTGGC
CCCCCACTTTGGTATTTCTATTTATTTTGCACCTGGTATGGGTTTTGTGTGTATGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCTGCACAGACAGTCAGATCTCAGCCATGTGGCCCCCATCCTCTGTGTCCGAGAGA
CAGAGGACAGTTTCCGCTCCCCAGGTCCTTGTCTGGCGCTGCCCGGCTCCGCCATCAGCA
GCCCGCTGGAAGTGATGCAGCTGTGGCTGCTGTCCAACTGTCCTCTGCCCCAGGGCAGCA
GGATGTTCAAATTCTTTCCCGTTTCCTTTCATGCCCGCTCCAGGGAGCTGGCTTGGTGGA
AGCTGACAGCTCAGCTGTTTGGTGTGTGGGTTGTTTTCTTCCTTAGTGAACCTTGTTTGC
GTAACATCTCGGGGTGTCTATATAAGGTAAGGTCAGCTTCAGCCCCGCCAACCGCCCCGC
AATTGAGCGGTGCTCTGGGGCAATTTCCTGCTGTTTCCCTCCCCCCGTCTTTGGTCTTGC
TCTGAAGTTCATTGTTGGATGGAGATTGTGAAAGGGTTACTTCCCTCTTTTTTTCTTTCT
GTTGGCCAGCAGATATGTATCGAGTGCCTGCGCTGAGCCTAGCACGGTCGTTGTTTCTGG
GGCTTGGACAAGACTTGGACGGATATGAAAGTAGCTGAAAAGAAAAGATCAAAAGGACAG
GCGCCCAAAGGCTTGCTTAGGTGTTACTTAGGGAGTTTACTGGGTTATTGAAGTGGTGGC
CCCCCACTTTGGTATTTCTATTTATTTTGCACCTGGTATGGGTTTTGTGTGTATGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-287, - strand, RNAz p=0.981454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-287, - strand, RNAz p=0.981454

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-345, gnl|bosTau2|chr18 (12083367-12083704)
               

               
               7-345, gnl|Hg17|chr16 (83191785-83190810)
               


               
               373-658, gnl|bosTau2|chr18 (12083707-12083976)
               

               
               373-658, gnl|Hg17|chr16 (83190790-83190548)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-345, gnl|bosTau2|chr18 (12083367-12083704)
               

               
               7-345, gnl|Hg17|chr16 (83191785-83190810)
               


               
               373-658, gnl|bosTau2|chr18 (12083707-12083976)
               

               
               373-658, gnl|Hg17|chr16 (83190790-83190548)

	7-345, gnl\|bosTau2\|chr18 (12083367-12083704)
	7-345, gnl\|Hg17\|chr16 (83191785-83190810)

	373-658, gnl\|bosTau2\|chr18 (12083707-12083976)
	373-658, gnl\|Hg17\|chr16 (83190790-83190548)