Non-Coding RNA Search

Ss1.1-Pig4-TMW8018J13.3

Sequence:


               
               TCCAACCCGCATCCTCATGGACACTATGTTGGGTTCCTAACCCACTGAGCCCCAGGGGGA
GCTCCCAGCATGCATTTTAAACAAGATTCCCCGGGGGCCAGTAAGCACGTTACAGTTGAG
AAGCTCTGTTCCAGAACCATCCCTGAGAGTGGTCCTTGCATGTCTCAATGGTATGTGGGC
ACCAGGCCAAGCTGGCAGATGGATGTGGGACGTATGGGGCTTTTGAGAGCGGGCTCTCCA
TCCCTCCTTTCCTCCCTCCATCTCTTTCTCTTACCTGCCGTGACATCATCTTTTGATTTT
TTTTCCTCTGGAAATCCTGAAACGATGGAGACTTGTTTTTGTTTTTCCCCATCCGTTGGA
GCCGATCCCTTTCATCTTTGATTCAGCCAATTCCCTTCAAAGCTAAATATTAAACAGATC
TGTCTCCTGACAGCTGACCCCAGCCTCGGCCGTGCCCGTGGTCCTCCCCCTGGGGGTAGA
GAGTCGAGCCGACAGAGGTGGAAGAGAGACAGGATGGAGCCGGTTCCTGTCCCCTGGGGA
AGCCCCAAAGTTGTGTCTCTGCCTTCACTTCAGCCAAACAGCCAGCGTCAAGCAACGAAG
AGCTTCTGGAAGGCATTCTTGCAGAAATGCCTTTTTTGCCGGAGGGTGAAAGGCCTTGCT
AATTGATTCTGTCTGCCTTTCAGATGAACTTAGAGAGACACAGGAGTTTGAATTCTAACA
GAGAGGTAACATTTTCGATACTGGAGAAAATGTTTCTCTATATGCCATATGACCCAGCTT
TGCATATTAGTTTTTTTTTTTTTTTCACCAGCTTGTCATTCTGTCCAGGGAAATGAGTAG
CTGAAGTTCACAAGGTTGTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAACCCGCATCCTCATGGACACTATGTTGGGTTCCTAACCCACTGAGCCCCAGGGGGA
GCTCCCAGCATGCATTTTAAACAAGATTCCCCGGGGGCCAGTAAGCACGTTACAGTTGAG
AAGCTCTGTTCCAGAACCATCCCTGAGAGTGGTCCTTGCATGTCTCAATGGTATGTGGGC
ACCAGGCCAAGCTGGCAGATGGATGTGGGACGTATGGGGCTTTTGAGAGCGGGCTCTCCA
TCCCTCCTTTCCTCCCTCCATCTCTTTCTCTTACCTGCCGTGACATCATCTTTTGATTTT
TTTTCCTCTGGAAATCCTGAAACGATGGAGACTTGTTTTTGTTTTTCCCCATCCGTTGGA
GCCGATCCCTTTCATCTTTGATTCAGCCAATTCCCTTCAAAGCTAAATATTAAACAGATC
TGTCTCCTGACAGCTGACCCCAGCCTCGGCCGTGCCCGTGGTCCTCCCCCTGGGGGTAGA
GAGTCGAGCCGACAGAGGTGGAAGAGAGACAGGATGGAGCCGGTTCCTGTCCCCTGGGGA
AGCCCCAAAGTTGTGTCTCTGCCTTCACTTCAGCCAAACAGCCAGCGTCAAGCAACGAAG
AGCTTCTGGAAGGCATTCTTGCAGAAATGCCTTTTTTGCCGGAGGGTGAAAGGCCTTGCT
AATTGATTCTGTCTGCCTTTCAGATGAACTTAGAGAGACACAGGAGTTTGAATTCTAACA
GAGAGGTAACATTTTCGATACTGGAGAAAATGTTTCTCTATATGCCATATGACCCAGCTT
TGCATATTAGTTTTTTTTTTTTTTTCACCAGCTTGTCATTCTGTCCAGGGAAATGAGTAG
CTGAAGTTCACAAGGTTGTCTCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               419-615, - strand, RNAz p=0.769561

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-615, - strand, RNAz p=0.769561

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               237-861, gnl|bosTau2|chr5 (73538052-73538678)
               

               
               237-861, gnl|Hg17|chr10 (29455859-29456496)
               

               
               237-861, gnl|Mm7|chr18 (4169788-4170336)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               237-861, gnl|bosTau2|chr5 (73538052-73538678)
               

               
               237-861, gnl|Hg17|chr10 (29455859-29456496)
               

               
               237-861, gnl|Mm7|chr18 (4169788-4170336)

	237-861, gnl\|bosTau2\|chr5 (73538052-73538678)
	237-861, gnl\|Hg17\|chr10 (29455859-29456496)
	237-861, gnl\|Mm7\|chr18 (4169788-4170336)