Non-Coding RNA Search

Ss1.1-Pig4-TMW8019A01.5

Sequence:


               
               TGACTTTTCAAGTCCGTCAACAAGCAACAATATCCCACTCATGAGAGTAGTGCAGTCTGT
CAAACACACAAAGAGGAAAAGCAGCACAGTGATGAAAGAAGGATGGATGGTCCACTACAC
CAGCAAGGACACACTGGTAAGACCCACAGCAAGCAGTTTTCTCTTGCCCTGCAAGCATTA
ATTGAAGGAGTTGCTGATGTCCTGTCAGGACCACGGGATGTCTGGGTTACCTGGAGCAAA
CCTCAGCACAGCAGGGCGCAAGATCAGGGGAGCATATTCACAATCTCTGAGCATCCGATT
GTAGTTGAACAAACAACTGAGTGAGAAAAGAAAGTGTAGGCAGCAATCTCAGGGAAACAA
AGTCATTTACCTCCGTTACTTAAGATGATTTCCAAACAACTTGAATGTCTACCTGTCATT
TTGTAGCTGCGTGAAAGTGACGAACTGTGCCTTTGGAATACTCCTCTTCGATTCAGAATT
TTCTTTTTAATGCCCTGCATTTTAGAGGAGAAAAAAAACAGTGATAACTCTTATATACTT
CTTAAAGCCGTAAATGTTCACTTAAAAACTGATCTTTTCATAAATATGGTGATCATGTAT
TTTATTAGATAAAAGACAGCACATTTTAATTTTTTGATATAATCAGAGTTGTTCACTGCT
TCATATTTTCCTAATAGTAGATGAGTGAGGTTGTGCATGTATGTAAGAGAGAAAAATTTC
AGTCTATGTTTCAGTTGAACTAATTGACATTTGATGTTAAGCTTCTTTCTCAGTTAGTGG
TAGTTATTGCCCATCACCTCCTAGCTATAGCATTCCCAGAATTTCTGTAGATAAGTAGAC
ACCTATAATCTAATTGCTCAACTTATAATCTCATCCTTCTCTTCTGAAGAGAGATTTACA
TGACTTACTGTAGGACTCAATACCATCCAGTACTTCCCAGACATGTTATAAAATATTTGA
AGCATATTTAGTGTATTTGATTAGTCTAAGATAGGTTGTGTAGGAGACCAAGTATAGTGT
TAGGGCTTTTTGATCTAAAAGGAAGAAACATGTACACACATACAGACACCCAAGGACCTG
ATCACCAAATCATTGAAATTTAGATCTCTAGTGAGTTTAAGTGGAGTTATTGATGCATAA
ACCCTGATCTTGTTAAGTTAATGCTATGGAGTCAACCTTGCCATCCATCACACCATTCTT
TAGCTTTTCTGTAACATTCAGAATTTTTCCATCTTTAATGGAAGGCAGACTGCCTGGCTG
GATCAGCATGGCATACCTTATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTTTTCAAGTCCGTCAACAAGCAACAATATCCCACTCATGAGAGTAGTGCAGTCTGT
CAAACACACAAAGAGGAAAAGCAGCACAGTGATGAAAGAAGGATGGATGGTCCACTACAC
CAGCAAGGACACACTGGTAAGACCCACAGCAAGCAGTTTTCTCTTGCCCTGCAAGCATTA
ATTGAAGGAGTTGCTGATGTCCTGTCAGGACCACGGGATGTCTGGGTTACCTGGAGCAAA
CCTCAGCACAGCAGGGCGCAAGATCAGGGGAGCATATTCACAATCTCTGAGCATCCGATT
GTAGTTGAACAAACAACTGAGTGAGAAAAGAAAGTGTAGGCAGCAATCTCAGGGAAACAA
AGTCATTTACCTCCGTTACTTAAGATGATTTCCAAACAACTTGAATGTCTACCTGTCATT
TTGTAGCTGCGTGAAAGTGACGAACTGTGCCTTTGGAATACTCCTCTTCGATTCAGAATT
TTCTTTTTAATGCCCTGCATTTTAGAGGAGAAAAAAAACAGTGATAACTCTTATATACTT
CTTAAAGCCGTAAATGTTCACTTAAAAACTGATCTTTTCATAAATATGGTGATCATGTAT
TTTATTAGATAAAAGACAGCACATTTTAATTTTTTGATATAATCAGAGTTGTTCACTGCT
TCATATTTTCCTAATAGTAGATGAGTGAGGTTGTGCATGTATGTAAGAGAGAAAAATTTC
AGTCTATGTTTCAGTTGAACTAATTGACATTTGATGTTAAGCTTCTTTCTCAGTTAGTGG
TAGTTATTGCCCATCACCTCCTAGCTATAGCATTCCCAGAATTTCTGTAGATAAGTAGAC
ACCTATAATCTAATTGCTCAACTTATAATCTCATCCTTCTCTTCTGAAGAGAGATTTACA
TGACTTACTGTAGGACTCAATACCATCCAGTACTTCCCAGACATGTTATAAAATATTTGA
AGCATATTTAGTGTATTTGATTAGTCTAAGATAGGTTGTGTAGGAGACCAAGTATAGTGT
TAGGGCTTTTTGATCTAAAAGGAAGAAACATGTACACACATACAGACACCCAAGGACCTG
ATCACCAAATCATTGAAATTTAGATCTCTAGTGAGTTTAAGTGGAGTTATTGATGCATAA
ACCCTGATCTTGTTAAGTTAATGCTATGGAGTCAACCTTGCCATCCATCACACCATTCTT
TAGCTTTTCTGTAACATTCAGAATTTTTCCATCTTTAATGGAAGGCAGACTGCCTGGCTG
GATCAGCATGGCATACCTTATGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1166-1284, - strand, RNAz p=0.854712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1166-1284, - strand, RNAz p=0.854712

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1284, gnl|bosTau2|chr21 (27201607-27202840)
               

               
               1-1284, gnl|Hg17|chr14 (29173510-29172304)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1284, gnl|bosTau2|chr21 (27201607-27202840)
               

               
               1-1284, gnl|Hg17|chr14 (29173510-29172304)

	1-1284, gnl\|bosTau2\|chr21 (27201607-27202840)
	1-1284, gnl\|Hg17\|chr14 (29173510-29172304)