Non-Coding RNA Search

Ss1.1-Pig4-TMW8019A11.3

Sequence:


               
               GCAGCGTGTGCCAGATCCCTGTGACCTCTATTCCATTTACGTTTGTCCCTTGGGCTGGCC
CCTCGCCCATGTGCATCTGCATCCTGTGTGACCCCCACACCCTTCCCACATCCATGTCCA
CCCCCTTTCCCTCCTCAGATAAACCATGCGAACTCCACTGCTTGCCCCTTGGGAAGGAGT
CTCCGCTGCTGGTGGCCGACAGGGTTCTGGATGGCACGCCCTGCGGACCCTACGAGACTG
ACCTCTGTGTGCACGGCAGGTGCCAGGTGATGTGTTTTCCTTACATCCTTGGTGGGGCTT
TGGAGGGGAGGCTCCCTCTCCCCAAAGGGGCTTGGGCTTAGGGATGGGTCAGAAGCCTCA
GGAGACCTGGGTGAGTGGCTTTTCTCAGGGAGGCATCAGTGGTGCTACCTCCTGCAGCTG
CCCTCCTTGTCCCCCACCCCCCTCCCCTCACCTCAGCAGCGACTGAACTTGAGTCCCACC
TGCCAACTGTGAGCTGAGATGCTGAAAGGTCATGTCAGGAACCTTACAGTAGCTTCAGAC
ATCGCAGCACAGGGAAGAGCATGTGGAACCCTCAGGTGGGACTGGAGATGTATGCGAGGT
GTATGTGCTCTGTTCAGCTGTAAAAGATGTAGTAGAACAGATCCCTTCTAGGCGGCACCT
GGAGAGGTGAACATGTCTGGCTTTGTGGGACCTCTGTGCCCACTGGAATGTAATCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGTGTGCCAGATCCCTGTGACCTCTATTCCATTTACGTTTGTCCCTTGGGCTGGCC
CCTCGCCCATGTGCATCTGCATCCTGTGTGACCCCCACACCCTTCCCACATCCATGTCCA
CCCCCTTTCCCTCCTCAGATAAACCATGCGAACTCCACTGCTTGCCCCTTGGGAAGGAGT
CTCCGCTGCTGGTGGCCGACAGGGTTCTGGATGGCACGCCCTGCGGACCCTACGAGACTG
ACCTCTGTGTGCACGGCAGGTGCCAGGTGATGTGTTTTCCTTACATCCTTGGTGGGGCTT
TGGAGGGGAGGCTCCCTCTCCCCAAAGGGGCTTGGGCTTAGGGATGGGTCAGAAGCCTCA
GGAGACCTGGGTGAGTGGCTTTTCTCAGGGAGGCATCAGTGGTGCTACCTCCTGCAGCTG
CCCTCCTTGTCCCCCACCCCCCTCCCCTCACCTCAGCAGCGACTGAACTTGAGTCCCACC
TGCCAACTGTGAGCTGAGATGCTGAAAGGTCATGTCAGGAACCTTACAGTAGCTTCAGAC
ATCGCAGCACAGGGAAGAGCATGTGGAACCCTCAGGTGGGACTGGAGATGTATGCGAGGT
GTATGTGCTCTGTTCAGCTGTAAAAGATGTAGTAGAACAGATCCCTTCTAGGCGGCACCT
GGAGAGGTGAACATGTCTGGCTTTGTGGGACCTCTGTGCCCACTGGAATGTAATCCCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               234-352, + strand, RNAz p=0.523532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-352, + strand, RNAz p=0.523532

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-720, gnl|bosTau2|chr21 (4966493-4965783)
               

               
               1-720, gnl|Hg17|chr15 (98466979-98466271)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr21 (4966493-4965783)
               

               
               1-720, gnl|Hg17|chr15 (98466979-98466271)

	1-720, gnl\|bosTau2\|chr21 (4966493-4965783)
	1-720, gnl\|Hg17\|chr15 (98466979-98466271)