Ss1.1-Pig4-TMW8019B16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCATGGCTTCCGGGACCTGCGGCAGTTCATTGACGAGTATGTGGAAACCGTGGACATG CTGAAGAGTCACATTAAAGAGGAACTGATGCAAGGGGAGGAATCTGACTCTGTGTATGAG TCCATGGCCCACCTTTCCACAGACCTGCTCATGAAGTGCTCCCTCAACCCCGGCTGCGAC GAGGAGCTGTACGAGTCCATGGCAGCCTTCGTCCCAGCGGCCACCGAGGACCTCTATGTT GAAATGCTTCAGGCCAGTACATCTAATCCAATGGCTGGAGACAGTTACTCTCGGACCACT AAGGACTCTATGATCCGCAAGTTTTTAGAAGGCAACAGCATGGGAATGGCCAGTATGGAG AGGGATGCGCACCATCTTGGCCAGGAAGAAGATGTTTATCACACAGTGGATGATGATGAG GCCTTTTCTGTGGACCTAGCCAGCAGGCCCCCTGTCCCAGTGCCAAGGCCAGAGGCCAGT GCTTCCAGCACTCACCAGGTTTCTGACAATGAACCATACATTTCTAAAGTTTTTGCAGAA AAAAGTCAAGAGCGGCCTGGGAATCTCTATGTTTCCTCAGAGAGCATCAGGAAAGAGCCA CCTGTCAGACCGTGGAGGGACAGGCCTCAGTCGAGCATATACGACCCTTTTGCTGGGATG AAGACGCCAGGCCAGCGGCAGCTTATTACCCTCCAGGAGCAGGTGAAGCTGGGCATCGTC AACGTGGATGAGGCCGTGCTCCACTTCAAAGAGTGGCAGCTCAACCAGAAGAAGCGGTCT GAATCTTTTCGCTTCCAGCAGGAAAATCTTAAACGGCTAAGAGAAAGCATCACCCGCAGA CAGAGAGAGAAGCAAAAATCAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCATGGCTTCCGGGACCTGCGGCAGTTCATTGACGAGTATGTGGAAACCGTGGACATG CTGAAGAGTCACATTAAAGAGGAACTGATGCAAGGGGAGGAATCTGACTCTGTGTATGAG TCCATGGCCCACCTTTCCACAGACCTGCTCATGAAGTGCTCCCTCAACCCCGGCTGCGAC GAGGAGCTGTACGAGTCCATGGCAGCCTTCGTCCCAGCGGCCACCGAGGACCTCTATGTT GAAATGCTTCAGGCCAGTACATCTAATCCAATGGCTGGAGACAGTTACTCTCGGACCACT AAGGACTCTATGATCCGCAAGTTTTTAGAAGGCAACAGCATGGGAATGGCCAGTATGGAG AGGGATGCGCACCATCTTGGCCAGGAAGAAGATGTTTATCACACAGTGGATGATGATGAG GCCTTTTCTGTGGACCTAGCCAGCAGGCCCCCTGTCCCAGTGCCAAGGCCAGAGGCCAGT GCTTCCAGCACTCACCAGGTTTCTGACAATGAACCATACATTTCTAAAGTTTTTGCAGAA AAAAGTCAAGAGCGGCCTGGGAATCTCTATGTTTCCTCAGAGAGCATCAGGAAAGAGCCA CCTGTCAGACCGTGGAGGGACAGGCCTCAGTCGAGCATATACGACCCTTTTGCTGGGATG AAGACGCCAGGCCAGCGGCAGCTTATTACCCTCCAGGAGCAGGTGAAGCTGGGCATCGTC AACGTGGATGAGGCCGTGCTCCACTTCAAAGAGTGGCAGCTCAACCAGAAGAAGCGGTCT GAATCTTTTCGCTTCCAGCAGGAAAATCTTAAACGGCTAAGAGAAAGCATCACCCGCAGA CAGAGAGAGAAGCAAAAATCAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 594-709, - strand, RNAz p=0.643241 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 594-709, - strand, RNAz p=0.643241 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 45-235, gnl|bosTau2|chr26 (8103150-8102960) | |
| 45-235, gnl|canFam2|chr28 (13022407-13022615) | |
| 45-235, gnl|dasNov1|scaffold_38262 (9148-9356) | |
| 45-235, gnl|echTel1|scaffold_294085 (42068-42272) | |
| 45-235, gnl|fr1|chrUn (284873720-284873535) | |
| 45-235, gnl|galGal2|chr6 (15965361-15965569) | |
| 45-235, gnl|hg17|chr10 (98395214-98395422) | |
| 45-235, gnl|Hg17|chr10 (98395410-98395220) | |
| 45-235, gnl|loxAfr1|scaffold_5857 (19700-19492) | |
| 45-235, gnl|mm7|chr19 (41215335-41215543) | |
| 45-235, gnl|Mm7|chr19 (41215531-41215341) | |
| 45-235, gnl|monDom2|scaffold_14 (25943441-25943232) | |
| 45-235, gnl|panTro1|chr8 (100085682-100085890) | |
| 45-235, gnl|rheMac2|chr9 (96186637-96186845) | |
| 45-235, gnl|rn3|chr1 (246636390-246636598) | |
| 45-235, gnl|xenTro1|scaffold_1324 (71533-71729) | |
| 330-529, gnl|bosTau2|chr26 (8083001-8082808) | |
| 330-529, gnl|Hg17|chr10 (98376654-98376455) | |
| 330-529, gnl|Mm7|chr19 (41196458-41196262) | |
| 594-805, gnl|bosTau2|chr26 (8078111-8077900) | |
| 594-805, gnl|canFam2|chr28 (13000764-13000935) | |
| 594-805, gnl|danRer3|chrUn (154780302-154780473) | |
| 594-805, gnl|dasNov1|scaffold_308 (108321-108490) | |
| 594-805, gnl|echTel1|scaffold_276801 (46113-45952) | |
| 594-805, gnl|fr1|chrUn (284874805-284874640) | |
| 594-805, gnl|galGal2|chr6 (15957647-15957815) | |
| 594-805, gnl|hg17|chr10 (98370085-98370256) | |
| 594-805, gnl|Hg17|chr10 (98370306-98370095) | |
| 594-805, gnl|loxAfr1|scaffold_5857 (45697-45526) | |
| 594-805, gnl|mm7|chr19 (41190132-41190300) | |
| 594-805, gnl|Mm7|chr19 (41190350-41190139) | |
| 594-805, gnl|monDom2|scaffold_14 (25970275-25970113) | |
| 594-805, gnl|panTro1|chr8 (100060430-100060601) | |
| 594-805, gnl|rheMac2|chr9 (96162927-96163098) | |
| 594-805, gnl|rn3|chr1 (246613605-246613780) | |
| 594-805, gnl|tetNig1|chr17 (786053-785894) | |
| 594-805, gnl|xenTro1|scaffold_1324 (61956-62116) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-235, gnl|bosTau2|chr26 (8103150-8102960) | |
| 45-235, gnl|canFam2|chr28 (13022407-13022615) | |
| 45-235, gnl|dasNov1|scaffold_38262 (9148-9356) | |
| 45-235, gnl|echTel1|scaffold_294085 (42068-42272) | |
| 45-235, gnl|fr1|chrUn (284873720-284873535) | |
| 45-235, gnl|galGal2|chr6 (15965361-15965569) | |
| 45-235, gnl|hg17|chr10 (98395214-98395422) | |
| 45-235, gnl|Hg17|chr10 (98395410-98395220) | |
| 45-235, gnl|loxAfr1|scaffold_5857 (19700-19492) | |
| 45-235, gnl|mm7|chr19 (41215335-41215543) | |
| 45-235, gnl|Mm7|chr19 (41215531-41215341) | |
| 45-235, gnl|monDom2|scaffold_14 (25943441-25943232) | |
| 45-235, gnl|panTro1|chr8 (100085682-100085890) | |
| 45-235, gnl|rheMac2|chr9 (96186637-96186845) | |
| 45-235, gnl|rn3|chr1 (246636390-246636598) | |
| 45-235, gnl|xenTro1|scaffold_1324 (71533-71729) | |
| 330-529, gnl|bosTau2|chr26 (8083001-8082808) | |
| 330-529, gnl|Hg17|chr10 (98376654-98376455) | |
| 330-529, gnl|Mm7|chr19 (41196458-41196262) | |
| 594-805, gnl|bosTau2|chr26 (8078111-8077900) | |
| 594-805, gnl|canFam2|chr28 (13000764-13000935) | |
| 594-805, gnl|danRer3|chrUn (154780302-154780473) | |
| 594-805, gnl|dasNov1|scaffold_308 (108321-108490) | |
| 594-805, gnl|echTel1|scaffold_276801 (46113-45952) | |
| 594-805, gnl|fr1|chrUn (284874805-284874640) | |
| 594-805, gnl|galGal2|chr6 (15957647-15957815) | |
| 594-805, gnl|hg17|chr10 (98370085-98370256) | |
| 594-805, gnl|Hg17|chr10 (98370306-98370095) | |
| 594-805, gnl|loxAfr1|scaffold_5857 (45697-45526) | |
| 594-805, gnl|mm7|chr19 (41190132-41190300) | |
| 594-805, gnl|Mm7|chr19 (41190350-41190139) | |
| 594-805, gnl|monDom2|scaffold_14 (25970275-25970113) | |
| 594-805, gnl|panTro1|chr8 (100060430-100060601) | |
| 594-805, gnl|rheMac2|chr9 (96162927-96163098) | |
| 594-805, gnl|rn3|chr1 (246613605-246613780) | |
| 594-805, gnl|tetNig1|chr17 (786053-785894) | |
| 594-805, gnl|xenTro1|scaffold_1324 (61956-62116) |