Non-Coding RNA Search

Ss1.1-Pig4-TMW8019F23.5

Sequence:


               
               GCACACTTCTCTACAGTGTTAACAGTTGTAATTAAGGAATAAACAGCACAGAGTGTCAGT
CCGATGACAATTTCATCTATAGTGTCACAATACAAAATGTCACAAAATATTAGAACTGTT
ATATAACTATAAAAAGTATCGACTTTAAAAAGCCAAAAGCCCTTTAACAAGGAAGTCACA
GAAAGAAGAAAAAAAGAAAACTGGCATAGAGACCAGAGCAATTTTATACCTTCTCAAGAA
GGTTCTGTCACAAAAATAAATTGATATCTTTTTTTTTTTTCCTGTTACATTACAGTTTGG
TTTCTAGCCATCCAGTTGATTTAGCAGGAGAATGCAGGGCTTTTTAGCAGCTTTGAATTG
GTAAACAGATTTAGATGGAGTAGAGAGAACATGAGGAAGTTGTTTTTTTTTTTTTTTTTT
AACATCCAATCTTTCCTAGCATATGCACATAAAAAGGTGAATGAAGCAATGTGAAACTTA
TTTCTCTTTAGTCAAGTGAAAAAAAAGGCTAAACATTTGTTGAGATGGGAAAATATTGTG
TCAAGCAAGTAGGCACATTCCAAAATTAAACAGTGGTTGATAACGTGAACGTCCTCAAAT
ATTTGCACGTGCGCTTCCTTGGAGTTCTGTAAATTAAATCACCAGTAGGTTCGATTACAA
TACAAAATGAATAGCAATTTAGCCATCTCAGCAAAGGTTCAGGTTTTTTCTGCCTTACAT
GGACTAAGTTGCTAAATAGTTTTTAACAAGAGTGTAATTTAATGTACCCTGGCTTATGAC
TTAAGGCATCAGGGAAGGTTTCAGTGGTGCCATTTCCCTGATTTCTAGTTAATACCTCAA
AAACTCCCTGGCCCCTACAAAGCTTTACTCCCCTCCCCTCCTTGTAGAATGGAACAGATT
GCACCACATGGTGTATGTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACTTCTCTACAGTGTTAACAGTTGTAATTAAGGAATAAACAGCACAGAGTGTCAGT
CCGATGACAATTTCATCTATAGTGTCACAATACAAAATGTCACAAAATATTAGAACTGTT
ATATAACTATAAAAAGTATCGACTTTAAAAAGCCAAAAGCCCTTTAACAAGGAAGTCACA
GAAAGAAGAAAAAAAGAAAACTGGCATAGAGACCAGAGCAATTTTATACCTTCTCAAGAA
GGTTCTGTCACAAAAATAAATTGATATCTTTTTTTTTTTTCCTGTTACATTACAGTTTGG
TTTCTAGCCATCCAGTTGATTTAGCAGGAGAATGCAGGGCTTTTTAGCAGCTTTGAATTG
GTAAACAGATTTAGATGGAGTAGAGAGAACATGAGGAAGTTGTTTTTTTTTTTTTTTTTT
AACATCCAATCTTTCCTAGCATATGCACATAAAAAGGTGAATGAAGCAATGTGAAACTTA
TTTCTCTTTAGTCAAGTGAAAAAAAAGGCTAAACATTTGTTGAGATGGGAAAATATTGTG
TCAAGCAAGTAGGCACATTCCAAAATTAAACAGTGGTTGATAACGTGAACGTCCTCAAAT
ATTTGCACGTGCGCTTCCTTGGAGTTCTGTAAATTAAATCACCAGTAGGTTCGATTACAA
TACAAAATGAATAGCAATTTAGCCATCTCAGCAAAGGTTCAGGTTTTTTCTGCCTTACAT
GGACTAAGTTGCTAAATAGTTTTTAACAAGAGTGTAATTTAATGTACCCTGGCTTATGAC
TTAAGGCATCAGGGAAGGTTTCAGTGGTGCCATTTCCCTGATTTCTAGTTAATACCTCAA
AAACTCCCTGGCCCCTACAAAGCTTTACTCCCCTCCCCTCCTTGTAGAATGGAACAGATT
GCACCACATGGTGTATGTTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               195-314, - strand, RNAz p=0.959509

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.959509

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-924, gnl|bosTau2|chr22 (30167975-30168915)
               

               
               1-924, gnl|Hg17|chr3 (62295247-62296185)
               

               
               1-924, gnl|Mm7|chr14 (10118336-10119255)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr22 (30167975-30168915)
               

               
               1-924, gnl|Hg17|chr3 (62295247-62296185)
               

               
               1-924, gnl|Mm7|chr14 (10118336-10119255)

	1-924, gnl\|bosTau2\|chr22 (30167975-30168915)
	1-924, gnl\|Hg17\|chr3 (62295247-62296185)
	1-924, gnl\|Mm7\|chr14 (10118336-10119255)