Non-Coding RNA Search

Ss1.1-Pig4-TMW8019M06.3

Sequence:


               
               CCTAAACAAGCCATCATCATAAATAATTTTAAGTGGCTTTGGATGAGACCTGGCAGTGTC
TCTAAACATTTCCTCAGGGAGACAGCAGTTGAGAATGTAATGTAAATAAGTGAGGAAAGG
AACTGCTCTTTGGTGAGTTCCTCTTATGGACCTAATTTATTTAATACTCAATATAGTCTT
TGTAGGAAGGCATTGATTTGGCCCCTTTTTGCAGACAGTAAAACTGAGACTCAAATTAAA
TAACTTGTCCAGTGTCAAACAGCTAGTATTGATAGAGCCTAGAATCAAACCTAGGATTGT
AAAAGCCTTGTTCTAAGTTAAGCCACTAAACTGTAAACTATAACCTATATCCAATAGTGT
ATAATAATGTTATAGTAACAGAAGTTTCCAGTGACCTTGAAAACAAGATGGATTTCTCTA
AGCATTAAAACAAATCCCTTACATTGCTGCCCCGGGGATGGTTTTAGGGAGCGCCAAGGC
AGCGTGGATGTGGATGGTGTCACCTTAGCAGAGCATCTGTGCCTCCCGAGACTGGGTTCT
TCCCAGGACTTGGGTGCTGCATAGAATTTCTCAAACACTAAAGGGCATCCTTTCCCACAG
GCTGCTGCTTGTTATAGTCACTTCCTATCCTCAGCCAAAGCAATCTTCAGAAGTAAAGCT
CCTGACCTGGCTCATCTTTCCTCACAAATTGCGTCCCCTGTTCCTTGGTGACCTTTGTGC
TTGGTTTCTGCTCTCAGCCCCTATCTGCTAGGAATCTGAGATCCTGCTTCAAGTCCTGCC
TAAGGGCTAGTCTTGGAGCTCAGCCCTGCCTCACTTTTTATTCTTCATAAAGTGCCAAAA
AGATTAGACCTGTGATTCATTACTTAGTTAGCTTTACAGGGCTGGAGCTGAGTGCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAACAAGCCATCATCATAAATAATTTTAAGTGGCTTTGGATGAGACCTGGCAGTGTC
TCTAAACATTTCCTCAGGGAGACAGCAGTTGAGAATGTAATGTAAATAAGTGAGGAAAGG
AACTGCTCTTTGGTGAGTTCCTCTTATGGACCTAATTTATTTAATACTCAATATAGTCTT
TGTAGGAAGGCATTGATTTGGCCCCTTTTTGCAGACAGTAAAACTGAGACTCAAATTAAA
TAACTTGTCCAGTGTCAAACAGCTAGTATTGATAGAGCCTAGAATCAAACCTAGGATTGT
AAAAGCCTTGTTCTAAGTTAAGCCACTAAACTGTAAACTATAACCTATATCCAATAGTGT
ATAATAATGTTATAGTAACAGAAGTTTCCAGTGACCTTGAAAACAAGATGGATTTCTCTA
AGCATTAAAACAAATCCCTTACATTGCTGCCCCGGGGATGGTTTTAGGGAGCGCCAAGGC
AGCGTGGATGTGGATGGTGTCACCTTAGCAGAGCATCTGTGCCTCCCGAGACTGGGTTCT
TCCCAGGACTTGGGTGCTGCATAGAATTTCTCAAACACTAAAGGGCATCCTTTCCCACAG
GCTGCTGCTTGTTATAGTCACTTCCTATCCTCAGCCAAAGCAATCTTCAGAAGTAAAGCT
CCTGACCTGGCTCATCTTTCCTCACAAATTGCGTCCCCTGTTCCTTGGTGACCTTTGTGC
TTGGTTTCTGCTCTCAGCCCCTATCTGCTAGGAATCTGAGATCCTGCTTCAAGTCCTGCC
TAAGGGCTAGTCTTGGAGCTCAGCCCTGCCTCACTTTTTATTCTTCATAAAGTGCCAAAA
AGATTAGACCTGTGATTCATTACTTAGTTAGCTTTACAGGGCTGGAGCTGAGTGCATGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               298-414, - strand, RNAz p=0.64781
               

               
               721-900, - strand, RNAz p=0.819827

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-414, - strand, RNAz p=0.64781
               

               
               721-900, - strand, RNAz p=0.819827

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               321-446, - strand, RNAmicro p=0.997371

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               321-446, - strand, RNAmicro p=0.997371

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr24 (37185985-37186877)
               

               
               1-900, gnl|Hg17|chr18 (46051537-46050664)
               

               
               1-900, gnl|Mm7|chr18 (74673371-74674180)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr24 (37185985-37186877)
               

               
               1-900, gnl|Hg17|chr18 (46051537-46050664)
               

               
               1-900, gnl|Mm7|chr18 (74673371-74674180)

	298-414, - strand, RNAz p=0.64781
	721-900, - strand, RNAz p=0.819827

	1-900, gnl\|bosTau2\|chr24 (37185985-37186877)
	1-900, gnl\|Hg17\|chr18 (46051537-46050664)
	1-900, gnl\|Mm7\|chr18 (74673371-74674180)