Non-Coding RNA Search

Ss1.1-Pig4-TMW8019P07.5

Sequence:


               
               GAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGT
TGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGG
CGAGCCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAG
TGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTT
TTCGGAACTGAGGCCATGATTAAGAGGGAGGCCTAGTCATGGCTGTACTAATAGAGAAAA
ATCCCTGTGTTAGCACCTCAGACTCTATATAAATAATCTGATACTGATGCAAAGAGGCCA
AAGGCAAAAGCATCAACTCAGGATGATGAGAGAAGGGGCAGATAAAATTGGTGGAGTTGA
CAAAAATTTGATAAACACCTTTGAGTAGGTTGAGTATTTCCAGTTATGCAACAAAATTTA
TCTGACATGCCATTGAGTAGAGATATATTTAAACAATTTCCTAATTCTTCTCCCCTGTGT
ACAGCGATGTAGGTTTTCTTATAGATTGTTCTGTTGGTCAATATGTGTATATAAATTGGG
CTGCAGAGATTGTATTCTCAAACCCTTGTACGGTAGGAGTGGGGGAAGAATACTCAGCTT
TGAGATTATTCCTGTCACTCCATCTTTTTTTAGCCTCTGTTTTGTCATCTGTAAAATGGG
TACATTCATAATGCTAAGTCATAGGATCCTTGTGATAATCCAGTTAGGAGGATATGTATA
AATTCCCAGCACAGCCCTTGGCACATGAAAGAGGCTCCCTGAGGCTTTAAGGGAAATGAT
TTTAAGCCTTTAAGGAATAAGATG------------------------------------
------------------------------------------------AAAAAAAAAGTG
AGCAGGATATATACGATTTCTCTTAAAAGTCTCTACTACGTTGCTTTCCAGGGAAATGGT
TCTTAATTAAACGCAGCTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGT
TGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGG
CGAGCCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAG
TGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTT
TTCGGAACTGAGGCCATGATTAAGAGGGAGGCCTAGTCATGGCTGTACTAATAGAGAAAA
ATCCCTGTGTTAGCACCTCAGACTCTATATAAATAATCTGATACTGATGCAAAGAGGCCA
AAGGCAAAAGCATCAACTCAGGATGATGAGAGAAGGGGCAGATAAAATTGGTGGAGTTGA
CAAAAATTTGATAAACACCTTTGAGTAGGTTGAGTATTTCCAGTTATGCAACAAAATTTA
TCTGACATGCCATTGAGTAGAGATATATTTAAACAATTTCCTAATTCTTCTCCCCTGTGT
ACAGCGATGTAGGTTTTCTTATAGATTGTTCTGTTGGTCAATATGTGTATATAAATTGGG
CTGCAGAGATTGTATTCTCAAACCCTTGTACGGTAGGAGTGGGGGAAGAATACTCAGCTT
TGAGATTATTCCTGTCACTCCATCTTTTTTTAGCCTCTGTTTTGTCATCTGTAAAATGGG
TACATTCATAATGCTAAGTCATAGGATCCTTGTGATAATCCAGTTAGGAGGATATGTATA
AATTCCCAGCACAGCCCTTGGCACATGAAAGAGGCTCCCTGAGGCTTTAAGGGAAATGAT
TTTAAGCCTTTAAGGAATAAGATG------------------------------------
------------------------------------------------AAAAAAAAAGTG
AGCAGGATATATACGATTTCTCTTAAAAGTCTCTACTACGTTGCTTTCCAGGGAAATGGT
TCTTAATTAAACGCAGCTTTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, + strand, RNAz p=0.937726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, + strand, RNAz p=0.937726

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-242, gnl|bosTau2|chr1 (39686697-39686938)
               

               
               1-242, gnl|Hg17|chr16 (33870597-33870836)
               

               
               1-242, gnl|Mm7|chr17 (38065322-38065563)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-242, gnl|bosTau2|chr1 (39686697-39686938)
               

               
               1-242, gnl|Hg17|chr16 (33870597-33870836)
               

               
               1-242, gnl|Mm7|chr17 (38065322-38065563)

	1-242, gnl\|bosTau2\|chr1 (39686697-39686938)
	1-242, gnl\|Hg17\|chr16 (33870597-33870836)
	1-242, gnl\|Mm7\|chr17 (38065322-38065563)