Ss1.1-Pig4-TMW8020C13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCTAGTCCGGGCCGCGGCCGCCGCCCCCGCCCGGGCCGCGCTCCCCCTCTCCCGCT CCTACCCCCTCCCTCCCCGGTCCAACTCCTCCTCCTTCCCCATGCCTCTGTTCCTCCTCC TCTTACTTATCCTGCTCCTGCTCCTCGAGGACGCCGGAGCCCAGCAAGGTGATGGATGTG GACATACTGTACTAGGCCCTGAAAGTGGAACCCTTACATCCATAAACTACCCACACACCT ATCCTAACAGCACCGTTTGCGAATGGGAGATCCGTGTAAAGATGGGAGAGAGAGTGCGCA TCAAATTTGGTGACTTTGACATTGAAGATTCTCATTCTTGTCACTTTAATTACTCGAGAA TTTATAACGGAATTGGAGTTAGCAGAACTGAAATAGGCAAATACTGTGGTCTGGGATTGC AAATGAATGATTCGATTGAGTCAAAAAGCAATGAAATTACAGTGCTGTTCATGAGTGGAA TTCATGTTTCTGGACGAGGATTCTTGGCCTCATACTCGGTTATAGATAAGCAAGATCTAA TTACTTGTTTAGACACTGCATCCAGTTTTTTGGAACCCGAGTTCAGCAAGTACTGCCCAG CTGGTTGTCTGCTTCCTTTCGCTGAGATATCTGGAACAATCCCTCATGGATACAGAGATT CCTCGCCATTGTGCATGGCTGGTGTGCATGCAGGCGTAGTGTCAAACATTTTGGGTGGCC AGATCAGTGTCGTAATTAGCAAAGGCATCCCATACTATGAAAGTTCTTTGGCTAACAACG TCACGTCTGTGGTGGGACACTTATCTACAAGTCTTTTTACATTTAAGACAAGTGGTTGTT ATGGAACACTAGGCATGGAATCTGGCGTAATTGCTGATGCTCAGATAACAGCATCATCTG TGCTGGAGTGGACAGACCACACAGGGCAGGAAAACAGCTGGAAACCTGAAAAGGCCAGAC TCAAAAAACCTGGACCTCCTTGGGCTGCTTTTGCCACTGATGAATACCAGTGGTTGCAAA TAGATCTCAATAAGGAAAAGAAGATTACAGGCATTGTAACCACTGGCTCCACAATGGTGG AGCATAATTACTACGTGTCGGCCTACAGAATTCTGTACAGTGATGATGGGCAGAGATGGA CTGTGTACAGAGAGCCTGGTGTGGAGCAGGATAAGATATTTCAAGGAAACAAAGATTATC ATCAAGATGTGCGTAATAACTTTTTGCCACCAATTATTGCACGTTTTATTAGAGTGAATC CTACCCAATGGCAGCAGAAAATTGCCATGAAAATGGAACTGCTTGGATGTCAGTTTATTC CTAAAGGTCGTTCTCCAAAACTTACTCAACCTCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCTAGTCCGGGCCGCGGCCGCCGCCCCCGCCCGGGCCGCGCTCCCCCTCTCCCGCT CCTACCCCCTCCCTCCCCGGTCCAACTCCTCCTCCTTCCCCATGCCTCTGTTCCTCCTCC TCTTACTTATCCTGCTCCTGCTCCTCGAGGACGCCGGAGCCCAGCAAGGTGATGGATGTG GACATACTGTACTAGGCCCTGAAAGTGGAACCCTTACATCCATAAACTACCCACACACCT ATCCTAACAGCACCGTTTGCGAATGGGAGATCCGTGTAAAGATGGGAGAGAGAGTGCGCA TCAAATTTGGTGACTTTGACATTGAAGATTCTCATTCTTGTCACTTTAATTACTCGAGAA TTTATAACGGAATTGGAGTTAGCAGAACTGAAATAGGCAAATACTGTGGTCTGGGATTGC AAATGAATGATTCGATTGAGTCAAAAAGCAATGAAATTACAGTGCTGTTCATGAGTGGAA TTCATGTTTCTGGACGAGGATTCTTGGCCTCATACTCGGTTATAGATAAGCAAGATCTAA TTACTTGTTTAGACACTGCATCCAGTTTTTTGGAACCCGAGTTCAGCAAGTACTGCCCAG CTGGTTGTCTGCTTCCTTTCGCTGAGATATCTGGAACAATCCCTCATGGATACAGAGATT CCTCGCCATTGTGCATGGCTGGTGTGCATGCAGGCGTAGTGTCAAACATTTTGGGTGGCC AGATCAGTGTCGTAATTAGCAAAGGCATCCCATACTATGAAAGTTCTTTGGCTAACAACG TCACGTCTGTGGTGGGACACTTATCTACAAGTCTTTTTACATTTAAGACAAGTGGTTGTT ATGGAACACTAGGCATGGAATCTGGCGTAATTGCTGATGCTCAGATAACAGCATCATCTG TGCTGGAGTGGACAGACCACACAGGGCAGGAAAACAGCTGGAAACCTGAAAAGGCCAGAC TCAAAAAACCTGGACCTCCTTGGGCTGCTTTTGCCACTGATGAATACCAGTGGTTGCAAA TAGATCTCAATAAGGAAAAGAAGATTACAGGCATTGTAACCACTGGCTCCACAATGGTGG AGCATAATTACTACGTGTCGGCCTACAGAATTCTGTACAGTGATGATGGGCAGAGATGGA CTGTGTACAGAGAGCCTGGTGTGGAGCAGGATAAGATATTTCAAGGAAACAAAGATTATC ATCAAGATGTGCGTAATAACTTTTTGCCACCAATTATTGCACGTTTTATTAGAGTGAATC CTACCCAATGGCAGCAGAAAATTGCCATGAAAATGGAACTGCTTGGATGTCAGTTTATTC CTAAAGGTCGTTCTCCAAAACTTACTCAACCTCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 834-1051, + strand, RNAz p=0.992823 | |
| 834-1051, + strand, RNAz p=0.995843 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 834-1051, + strand, RNAz p=0.992823 | |
| 834-1051, + strand, RNAz p=0.995843 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 166-397, gnl|bosTau2|chr1 (22705029-22704798) | |
| 166-397, gnl|canFam2|chr33 (8661554-8661729) | |
| 166-397, gnl|danRer3|chr20 (49723677-49723843) | |
| 166-397, gnl|dasNov1|scaffold_39478 (1765-1920) | |
| 166-397, gnl|echTel1|scaffold_324939 (52490-52315) | |
| 166-397, gnl|fr1|chrUn (191360849-191360676) | |
| 166-397, gnl|galGal2|chr1 (78632627-78632452) | |
| 166-397, gnl|hg17|chr3 (100083070-100083245) | |
| 166-397, gnl|Hg17|chr3 (100083304-100083073) | |
| 166-397, gnl|loxAfr1|scaffold_754 (92944-93119) | |
| 166-397, gnl|mm7|chr16 (58360949-58360774) | |
| 166-397, gnl|Mm7|chr16 (58360715-58360944) | |
| 166-397, gnl|monDom2|scaffold_50 (12171797-12171622) | |
| 166-397, gnl|oryCun1|scaffold_197416 (12140-12315) | |
| 166-397, gnl|panTro1|chr2 (101278899-101279074) | |
| 166-397, gnl|rheMac2|chr2 (19060887-19061062) | |
| 166-397, gnl|rn3|chr11 (43037599-43037774) | |
| 166-397, gnl|tetNig1|chr2 (8438093-8437921) | |
| 166-397, gnl|xenTro1|scaffold_116 (1380447-1380272) | |
| 660-794, gnl|bosTau2|chr1 (22669978-22669844) | |
| 660-794, gnl|canFam2|chr33 (8622176-8622363) | |
| 660-794, gnl|danRer3|chr9 (28828757-28828941) | |
| 660-794, gnl|dasNov1|scaffold_7065 (92495-92682) | |
| 660-794, gnl|echTel1|scaffold_261873 (3470-3656) | |
| 660-794, gnl|fr1|chrUn (191365817-191365639) | |
| 660-794, gnl|galGal2|chr1 (78642653-78642448) | |
| 660-794, gnl|hg17|chr3 (100023755-100023940) | |
| 660-794, gnl|Hg17|chr3 (100023895-100023761) | |
| 660-794, gnl|mm7|chr16 (58385113-58384923) | |
| 660-794, gnl|Mm7|chr16 (58384971-58385105) | |
| 660-794, gnl|monDom2|scaffold_50 (12202967-12202781) | |
| 660-794, gnl|oryCun1|scaffold_200743 (147585-147771) | |
| 660-794, gnl|panTro1|chr2 (101224567-101224752) | |
| 660-794, gnl|rheMac2|chr2 (19013151-19013337) | |
| 660-794, gnl|rn3|chr11 (43015013-43015207) | |
| 660-794, gnl|tetNig1|chr2 (8441703-8441548) | |
| 660-794, gnl|xenTro1|scaffold_116 (1387786-1387598) | |
| 834-1051, gnl|bosTau2|chr1 (22666784-22666567) | |
| 834-1051, gnl|canFam2|chr33 (8619509-8619675) | |
| 834-1051, gnl|danRer3|chr9 (28824273-28824437) | |
| 834-1051, gnl|dasNov1|scaffold_7065 (89910-90076) | |
| 834-1051, gnl|fr1|chrUn (191366333-191366169) | |
| 834-1051, gnl|galGal2|chr1 (78646617-78646451) | |
| 834-1051, gnl|hg17|chr3 (100020733-100020899) | |
| 834-1051, gnl|Hg17|chr3 (100020952-100020735) | |
| 834-1051, gnl|loxAfr1|scaffold_754 (37047-37213) | |
| 834-1051, gnl|mm7|chr16 (58387099-58386933) | |
| 834-1051, gnl|Mm7|chr16 (58386878-58387095) | |
| 834-1051, gnl|monDom2|scaffold_50 (12207692-12207532) | |
| 834-1051, gnl|panTro1|chr2 (101221553-101221719) | |
| 834-1051, gnl|rheMac2|chr2 (19010151-19010317) | |
| 834-1051, gnl|rn3|chr11 (43012754-43012920) | |
| 834-1051, gnl|tetNig1|chr2 (8442115-8441966) | |
| 834-1051, gnl|xenTro1|scaffold_116 (1390932-1390766) | |
| 1173-1338, gnl|bosTau2|chr1 (22662819-22662654) | |
| 1173-1338, gnl|canFam2|chr33 (8613881-8614074) | |
| 1173-1338, gnl|danRer3|chr9 (28818807-28819008) | |
| 1173-1338, gnl|dasNov1|scaffold_7065 (85530-85722) | |
| 1173-1338, gnl|echTel1|scaffold_38586 (1072-881) | |
| 1173-1338, gnl|fr1|chrUn (191367328-191367158) | |
| 1173-1338, gnl|galGal2|chr1 (78651021-78650842) | |
| 1173-1338, gnl|hg17|chr3 (100013855-100014050) | |
| 1173-1338, gnl|Hg17|chr3 (100014019-100013854) | |
| 1173-1338, gnl|loxAfr1|scaffold_754 (30467-30658) | |
| 1173-1338, gnl|mm7|chr16 (58391444-58391251) | |
| 1173-1338, gnl|Mm7|chr16 (58391278-58391443) | |
| 1173-1338, gnl|monDom2|scaffold_50 (12216195-12216000) | |
| 1173-1338, gnl|oryCun1|scaffold_200743 (143274-143466) | |
| 1173-1338, gnl|panTro1|chr2 (101214654-101214849) | |
| 1173-1338, gnl|rheMac2|chr2 (19003858-19004055) | |
| 1173-1338, gnl|rn3|chr11 (43008294-43008487) | |
| 1173-1338, gnl|tetNig1|chr2 (8443245-8443093) | |
| 1173-1338, gnl|xenTro1|scaffold_116 (1392881-1392689) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-397, gnl|bosTau2|chr1 (22705029-22704798) | |
| 166-397, gnl|canFam2|chr33 (8661554-8661729) | |
| 166-397, gnl|danRer3|chr20 (49723677-49723843) | |
| 166-397, gnl|dasNov1|scaffold_39478 (1765-1920) | |
| 166-397, gnl|echTel1|scaffold_324939 (52490-52315) | |
| 166-397, gnl|fr1|chrUn (191360849-191360676) | |
| 166-397, gnl|galGal2|chr1 (78632627-78632452) | |
| 166-397, gnl|hg17|chr3 (100083070-100083245) | |
| 166-397, gnl|Hg17|chr3 (100083304-100083073) | |
| 166-397, gnl|loxAfr1|scaffold_754 (92944-93119) | |
| 166-397, gnl|mm7|chr16 (58360949-58360774) | |
| 166-397, gnl|Mm7|chr16 (58360715-58360944) | |
| 166-397, gnl|monDom2|scaffold_50 (12171797-12171622) | |
| 166-397, gnl|oryCun1|scaffold_197416 (12140-12315) | |
| 166-397, gnl|panTro1|chr2 (101278899-101279074) | |
| 166-397, gnl|rheMac2|chr2 (19060887-19061062) | |
| 166-397, gnl|rn3|chr11 (43037599-43037774) | |
| 166-397, gnl|tetNig1|chr2 (8438093-8437921) | |
| 166-397, gnl|xenTro1|scaffold_116 (1380447-1380272) | |
| 660-794, gnl|bosTau2|chr1 (22669978-22669844) | |
| 660-794, gnl|canFam2|chr33 (8622176-8622363) | |
| 660-794, gnl|danRer3|chr9 (28828757-28828941) | |
| 660-794, gnl|dasNov1|scaffold_7065 (92495-92682) | |
| 660-794, gnl|echTel1|scaffold_261873 (3470-3656) | |
| 660-794, gnl|fr1|chrUn (191365817-191365639) | |
| 660-794, gnl|galGal2|chr1 (78642653-78642448) | |
| 660-794, gnl|hg17|chr3 (100023755-100023940) | |
| 660-794, gnl|Hg17|chr3 (100023895-100023761) | |
| 660-794, gnl|mm7|chr16 (58385113-58384923) | |
| 660-794, gnl|Mm7|chr16 (58384971-58385105) | |
| 660-794, gnl|monDom2|scaffold_50 (12202967-12202781) | |
| 660-794, gnl|oryCun1|scaffold_200743 (147585-147771) | |
| 660-794, gnl|panTro1|chr2 (101224567-101224752) | |
| 660-794, gnl|rheMac2|chr2 (19013151-19013337) | |
| 660-794, gnl|rn3|chr11 (43015013-43015207) | |
| 660-794, gnl|tetNig1|chr2 (8441703-8441548) | |
| 660-794, gnl|xenTro1|scaffold_116 (1387786-1387598) | |
| 834-1051, gnl|bosTau2|chr1 (22666784-22666567) | |
| 834-1051, gnl|canFam2|chr33 (8619509-8619675) | |
| 834-1051, gnl|danRer3|chr9 (28824273-28824437) | |
| 834-1051, gnl|dasNov1|scaffold_7065 (89910-90076) | |
| 834-1051, gnl|fr1|chrUn (191366333-191366169) | |
| 834-1051, gnl|galGal2|chr1 (78646617-78646451) | |
| 834-1051, gnl|hg17|chr3 (100020733-100020899) | |
| 834-1051, gnl|Hg17|chr3 (100020952-100020735) | |
| 834-1051, gnl|loxAfr1|scaffold_754 (37047-37213) | |
| 834-1051, gnl|mm7|chr16 (58387099-58386933) | |
| 834-1051, gnl|Mm7|chr16 (58386878-58387095) | |
| 834-1051, gnl|monDom2|scaffold_50 (12207692-12207532) | |
| 834-1051, gnl|panTro1|chr2 (101221553-101221719) | |
| 834-1051, gnl|rheMac2|chr2 (19010151-19010317) | |
| 834-1051, gnl|rn3|chr11 (43012754-43012920) | |
| 834-1051, gnl|tetNig1|chr2 (8442115-8441966) | |
| 834-1051, gnl|xenTro1|scaffold_116 (1390932-1390766) | |
| 1173-1338, gnl|bosTau2|chr1 (22662819-22662654) | |
| 1173-1338, gnl|canFam2|chr33 (8613881-8614074) | |
| 1173-1338, gnl|danRer3|chr9 (28818807-28819008) | |
| 1173-1338, gnl|dasNov1|scaffold_7065 (85530-85722) | |
| 1173-1338, gnl|echTel1|scaffold_38586 (1072-881) | |
| 1173-1338, gnl|fr1|chrUn (191367328-191367158) | |
| 1173-1338, gnl|galGal2|chr1 (78651021-78650842) | |
| 1173-1338, gnl|hg17|chr3 (100013855-100014050) | |
| 1173-1338, gnl|Hg17|chr3 (100014019-100013854) | |
| 1173-1338, gnl|loxAfr1|scaffold_754 (30467-30658) | |
| 1173-1338, gnl|mm7|chr16 (58391444-58391251) | |
| 1173-1338, gnl|Mm7|chr16 (58391278-58391443) | |
| 1173-1338, gnl|monDom2|scaffold_50 (12216195-12216000) | |
| 1173-1338, gnl|oryCun1|scaffold_200743 (143274-143466) | |
| 1173-1338, gnl|panTro1|chr2 (101214654-101214849) | |
| 1173-1338, gnl|rheMac2|chr2 (19003858-19004055) | |
| 1173-1338, gnl|rn3|chr11 (43008294-43008487) | |
| 1173-1338, gnl|tetNig1|chr2 (8443245-8443093) | |
| 1173-1338, gnl|xenTro1|scaffold_116 (1392881-1392689) |