Ss1.1-Pig4-TMW8020C15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACTTGTTCATGTGTTTTGGAGGCACCGTCTCTCCCTGGGATCAGGTGTCCTTCTTTC TCTTCATCATCTTTGTGGTGTACACCATGCTGCCCTTCAACATGAGAGATGCCATCATCG CCAGCGTCCTCACCTCCTCTTCCCACACCATCGTGCTGAGCGTCTGCCTGTCTGCAACGC CTGGGGCCAAGGAGCACCTGGTCTGGCAGATCCTGGCCAACGTGATCATTTTCATCTGCG GGAACCTGGCGGGGGCGTACCACAAGCACCTCATGGAACTTGCTCTGCAGCAAACATATC AGGACACGTGCAATTGCATCAAGTCCCGGATCAAGTTGGAGTTCGAAAAACGCCAGCAGG AGCGACTTCTGCTGTCCCTGCTGCCGGCGCACATAGCCATGGAGATGAAAGCTGAGATCA TTCAGCGGCTGCAGGGCCCCAAAGCCGGCCAAATGGAAAACACCAACAACTTCCACAACC TGTATGTCAAGCGACACACCAATGTCAGCATCCTCTATGCGGACATCGTTGGATTCACCC GGCTGGCCAGCGACTGCTCCCCAGGAGAACTGGTCCACATGCTGAACGAGCTCTTTGGTA AATTTGATCAAATCGCAAAGGAGAATGAATGCATGAGAATAAAAATTTTAGGAGACTGCT ACTACTGTGTGTCCGGACTCCCTATATCGCTGCCCAACCACGCCAAGAACTGTGTAAAGA TGGGACTAGATATGTGTGAAGCCATAAAGAAAGTGAGGGACGCCACTGGAATTGAATCAA CATGCGCGTGGGAGTGCATTCGGAAAACGTCCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACTTGTTCATGTGTTTTGGAGGCACCGTCTCTCCCTGGGATCAGGTGTCCTTCTTTC TCTTCATCATCTTTGTGGTGTACACCATGCTGCCCTTCAACATGAGAGATGCCATCATCG CCAGCGTCCTCACCTCCTCTTCCCACACCATCGTGCTGAGCGTCTGCCTGTCTGCAACGC CTGGGGCCAAGGAGCACCTGGTCTGGCAGATCCTGGCCAACGTGATCATTTTCATCTGCG GGAACCTGGCGGGGGCGTACCACAAGCACCTCATGGAACTTGCTCTGCAGCAAACATATC AGGACACGTGCAATTGCATCAAGTCCCGGATCAAGTTGGAGTTCGAAAAACGCCAGCAGG AGCGACTTCTGCTGTCCCTGCTGCCGGCGCACATAGCCATGGAGATGAAAGCTGAGATCA TTCAGCGGCTGCAGGGCCCCAAAGCCGGCCAAATGGAAAACACCAACAACTTCCACAACC TGTATGTCAAGCGACACACCAATGTCAGCATCCTCTATGCGGACATCGTTGGATTCACCC GGCTGGCCAGCGACTGCTCCCCAGGAGAACTGGTCCACATGCTGAACGAGCTCTTTGGTA AATTTGATCAAATCGCAAAGGAGAATGAATGCATGAGAATAAAAATTTTAGGAGACTGCT ACTACTGTGTGTCCGGACTCCCTATATCGCTGCCCAACCACGCCAAGAACTGTGTAAAGA TGGGACTAGATATGTGTGAAGCCATAAAGAAAGTGAGGGACGCCACTGGAATTGAATCAA CATGCGCGTGGGAGTGCATTCGGAAAACGTCCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 357-475, - strand, RNAz p=0.681942 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 357-475, - strand, RNAz p=0.681942 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 45-209, gnl|bosTau2|chr20 (38941744-38941580) | |
| 45-209, gnl|canFam2|chr34 (9422058-9421930) | |
| 45-209, gnl|danRer3|chr14 (27375925-27375792) | |
| 45-209, gnl|dasNov1|scaffold_5424 (69133-69260) | |
| 45-209, gnl|echTel1|scaffold_273973 (9582-9449) | |
| 45-209, gnl|fr1|chrUn (99884724-99884851) | |
| 45-209, gnl|galGal2|chr2 (79390766-79390633) | |
| 45-209, gnl|hg17|chr5 (7573840-7573973) | |
| 45-209, gnl|Hg17|chr5 (7573848-7574012) | |
| 45-209, gnl|loxAfr1|scaffold_12312 (17055-17188) | |
| 45-209, gnl|mm7|chr13 (65798108-65797975) | |
| 45-209, gnl|Mm7|chr13 (65798098-65797934) | |
| 45-209, gnl|monDom2|scaffold_4 (26748966-26749097) | |
| 45-209, gnl|oryCun1|scaffold_205969 (7719-7852) | |
| 45-209, gnl|panTro1|chr4 (7757154-7757295) | |
| 45-209, gnl|rheMac2|chr6 (7366421-7366554) | |
| 45-209, gnl|rn3|chr17 (4666240-4666373) | |
| 45-209, gnl|tetNig1|chr21 (4471818-4471693) | |
| 357-508, gnl|bosTau2|chr20 (38757174-38757023) | |
| 357-508, gnl|canFam2|chr34 (9266226-9266060) | |
| 357-508, gnl|danRer3|chr16 (3876209-3876055) | |
| 357-508, gnl|dasNov1|scaffold_19022 (48450-48613) | |
| 357-508, gnl|echTel1|scaffold_301737 (11554-11714) | |
| 357-508, gnl|fr1|chrUn (735414-735573) | |
| 357-508, gnl|galGal2|chr2 (79320126-79319966) | |
| 357-508, gnl|hg17|chr5 (7743795-7743960) | |
| 357-508, gnl|Hg17|chr5 (7743801-7743952) | |
| 357-508, gnl|loxAfr1|scaffold_50116 (35673-35833) | |
| 357-508, gnl|mm7|chr13 (65648681-65648521) | |
| 357-508, gnl|Mm7|chr13 (65648673-65648523) | |
| 357-508, gnl|monDom2|scaffold_4 (26974221-26974382) | |
| 357-508, gnl|oryCun1|scaffold_209489 (15068-14902) | |
| 357-508, gnl|panTro1|chr4 (7931788-7931953) | |
| 357-508, gnl|rheMac2|chr6 (7537350-7537515) | |
| 357-508, gnl|rn3|chr17 (4879215-4879375) | |
| 357-508, gnl|tetNig1|chr21 (4469740-4469577) | |
| 357-508, gnl|xenTro1|scaffold_133 (975942-975812) | |
| 619-759, gnl|bosTau2|chr10 (12173491-12173632) | |
| 619-759, gnl|Hg17|chr14 (23869343-23869200) | |
| 619-759, gnl|Mm7|chr14 (50646417-50646272) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-209, gnl|bosTau2|chr20 (38941744-38941580) | |
| 45-209, gnl|canFam2|chr34 (9422058-9421930) | |
| 45-209, gnl|danRer3|chr14 (27375925-27375792) | |
| 45-209, gnl|dasNov1|scaffold_5424 (69133-69260) | |
| 45-209, gnl|echTel1|scaffold_273973 (9582-9449) | |
| 45-209, gnl|fr1|chrUn (99884724-99884851) | |
| 45-209, gnl|galGal2|chr2 (79390766-79390633) | |
| 45-209, gnl|hg17|chr5 (7573840-7573973) | |
| 45-209, gnl|Hg17|chr5 (7573848-7574012) | |
| 45-209, gnl|loxAfr1|scaffold_12312 (17055-17188) | |
| 45-209, gnl|mm7|chr13 (65798108-65797975) | |
| 45-209, gnl|Mm7|chr13 (65798098-65797934) | |
| 45-209, gnl|monDom2|scaffold_4 (26748966-26749097) | |
| 45-209, gnl|oryCun1|scaffold_205969 (7719-7852) | |
| 45-209, gnl|panTro1|chr4 (7757154-7757295) | |
| 45-209, gnl|rheMac2|chr6 (7366421-7366554) | |
| 45-209, gnl|rn3|chr17 (4666240-4666373) | |
| 45-209, gnl|tetNig1|chr21 (4471818-4471693) | |
| 357-508, gnl|bosTau2|chr20 (38757174-38757023) | |
| 357-508, gnl|canFam2|chr34 (9266226-9266060) | |
| 357-508, gnl|danRer3|chr16 (3876209-3876055) | |
| 357-508, gnl|dasNov1|scaffold_19022 (48450-48613) | |
| 357-508, gnl|echTel1|scaffold_301737 (11554-11714) | |
| 357-508, gnl|fr1|chrUn (735414-735573) | |
| 357-508, gnl|galGal2|chr2 (79320126-79319966) | |
| 357-508, gnl|hg17|chr5 (7743795-7743960) | |
| 357-508, gnl|Hg17|chr5 (7743801-7743952) | |
| 357-508, gnl|loxAfr1|scaffold_50116 (35673-35833) | |
| 357-508, gnl|mm7|chr13 (65648681-65648521) | |
| 357-508, gnl|Mm7|chr13 (65648673-65648523) | |
| 357-508, gnl|monDom2|scaffold_4 (26974221-26974382) | |
| 357-508, gnl|oryCun1|scaffold_209489 (15068-14902) | |
| 357-508, gnl|panTro1|chr4 (7931788-7931953) | |
| 357-508, gnl|rheMac2|chr6 (7537350-7537515) | |
| 357-508, gnl|rn3|chr17 (4879215-4879375) | |
| 357-508, gnl|tetNig1|chr21 (4469740-4469577) | |
| 357-508, gnl|xenTro1|scaffold_133 (975942-975812) | |
| 619-759, gnl|bosTau2|chr10 (12173491-12173632) | |
| 619-759, gnl|Hg17|chr14 (23869343-23869200) | |
| 619-759, gnl|Mm7|chr14 (50646417-50646272) |