Non-Coding RNA Search

Ss1.1-Pig4-TMW8021G19.3

Sequence:


               
               TGAAGAGTAGCTATCAGATTTCGTCATAAAACGGCGACCAGACAGGCGGCGCCATCTTCG
AACTTGGACTTCCGGAAGGACTTTGGCGAGGGGGCAGCCATTTTAAGGGGCGCTGATGGA
TACCTACGGGGTCGGCTGCGTTGCCCTGGGGGAGGCCGGCCCCGTGGGGAACATGACTGT
GGTAGACTCTCCTCGGCAAGACATGCTAGACCAGCTTGATGTCAAGGCCTCTTCAGAGAC
AAGAAGTGTGGAGGCTTCCATCGAGATGTCATTACCGACCCCTTTGCCTGGATTTGAGGA
TTCTCTTGATGAGAGGAGGCTCCCTCCAGAACAGGAAAGCCTCTCCAGAGTGGAACAGCA
AGATCTTTCTTCAGAGATGTCAAACATCCCAAAGCCTAGGGCCTCACAGCCTGGCCAGAA
GAGAGGTGGGAGGCCACGGAGAGGCCCCCAAAGGCCCCAGCCGCCTAATCCTCCATCAGC
CCCTCTGGTTCCTGGTCTCTTGGATGAGCCCAACCCTCTGTCTACCCCCATGCCTAAGAA
ACGAAGTCGAAAGTCCAAGGCAGACCTGCTACTGCTGAAGTTGTCAAAAGACCTGGATCA
GCCAAAGTCTCCGCCTCCAAAGAGGCCCCCTCCTGGGGAACGGCCCCGCCGAAGGGCTGC
CCAAGTGGCGCTCCTGTATCTTCAGGAGCTGGCTGAAGAGCTCTCAACAACCCTGCCTGC
TCCAGTGTCTTGTCCTGAGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAGTAGCTATCAGATTTCGTCATAAAACGGCGACCAGACAGGCGGCGCCATCTTCG
AACTTGGACTTCCGGAAGGACTTTGGCGAGGGGGCAGCCATTTTAAGGGGCGCTGATGGA
TACCTACGGGGTCGGCTGCGTTGCCCTGGGGGAGGCCGGCCCCGTGGGGAACATGACTGT
GGTAGACTCTCCTCGGCAAGACATGCTAGACCAGCTTGATGTCAAGGCCTCTTCAGAGAC
AAGAAGTGTGGAGGCTTCCATCGAGATGTCATTACCGACCCCTTTGCCTGGATTTGAGGA
TTCTCTTGATGAGAGGAGGCTCCCTCCAGAACAGGAAAGCCTCTCCAGAGTGGAACAGCA
AGATCTTTCTTCAGAGATGTCAAACATCCCAAAGCCTAGGGCCTCACAGCCTGGCCAGAA
GAGAGGTGGGAGGCCACGGAGAGGCCCCCAAAGGCCCCAGCCGCCTAATCCTCCATCAGC
CCCTCTGGTTCCTGGTCTCTTGGATGAGCCCAACCCTCTGTCTACCCCCATGCCTAAGAA
ACGAAGTCGAAAGTCCAAGGCAGACCTGCTACTGCTGAAGTTGTCAAAAGACCTGGATCA
GCCAAAGTCTCCGCCTCCAAAGAGGCCCCCTCCTGGGGAACGGCCCCGCCGAAGGGCTGC
CCAAGTGGCGCTCCTGTATCTTCAGGAGCTGGCTGAAGAGCTCTCAACAACCCTGCCTGC
TCCAGTGTCTTGTCCTGAGAGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55603426|ref|XP_515714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55603426|ref|XP_515714.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-479, - strand, RNAz p=0.650013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-479, - strand, RNAz p=0.650013

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               361-631, gnl|bosTau2|chr11 (51998350-51998620)
               

               
               361-631, gnl|Hg17|chr2 (27477667-27477397)
               

               
               361-631, gnl|Mm7|chr5 (30206607-30206337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               361-631, gnl|bosTau2|chr11 (51998350-51998620)
               

               
               361-631, gnl|Hg17|chr2 (27477667-27477397)
               

               
               361-631, gnl|Mm7|chr5 (30206607-30206337)

	361-631, gnl\|bosTau2\|chr11 (51998350-51998620)
	361-631, gnl\|Hg17\|chr2 (27477667-27477397)
	361-631, gnl\|Mm7\|chr5 (30206607-30206337)