Non-Coding RNA Search

Ss1.1-Pig4-TMW8022C20.3

Sequence:


               
               TGCTTTTCCTTTCCTCCTTGACCCTACCTTAGCCATTAGTTTTCACATTGCTTCAGAGTA
CTTTTTAGTCTGTTTGATACCACGCCATTAAAAACTCATTGGAAGGGCTTGAAAGGCATT
ACAGTAATTGTCTTACCTAAACAAAATTCCATGGGAAAATAGGGCTGTGGAAAGGACCTG
TAATCTCCCAAACTAGGTCTTTGTTTGGATGTGTTTATTTTAAATTGGTTTGTGGTAATC
CCACTGAGGTTTATATTGATAATAGTAAATCAGTTTTAACTAATTACTTAAATTAGTATT
TGAAGATTTTTTTTTTTTGTTTTAAAGGAGAAAAAGATAGCTTTTGCCTTAAAGACTCTG
CCCCCTTGCTGGAAGGGGTTAGAAGGGTTTTATAGTTTAGGGAGTGGAAAATACGGTTGT
AGATAAGGATCAGGGTAGAAGCAAGGTAGAAGCAAGCTTGCATTGTCTTTCACAGCTGGT
ATTTAGTGGCTCCAGCACTGGTTCTGGTAGTCCTTCTTCCTGGTGTCTGAACCTGCTGAG
GTTCACGGTCTTTATGCCTCTGCACAGAAGGAATTCAGCAAGAGACAAAGTGATAGGCAA
GAAATAGATTTATTAAGATAGGACACTTATGAGAGATGCAGGTGGCAGGCAAGGAGGCTC
TGCCAGTATTTGAAGAACTTTGAATGGAGATGGTTTACATTATATGTGGATATAATTTAA
ATCATTAAATAATGGTGGTGCTTTGCTAAAGGTCTTTGTGTTTTTCTTTCAGGAGAGAAA
TAGAAACAAACAATAACCATGTGAAGATGTCCTGTTAGAATCACAACACTAATGATGTAG
ACTCTGGAAATGCCTAATAAGTCAAAGAAGACGTTATTACAGCTTTTTTCTGCTTAAGGT
GACATCTTTGAACTCTAACACAGATTGACTCTTCTTGTAATGGTTTTCATCAGCGCATCT
GCCCTTATACTTTCACCAAACACACTTGAGAACTGTAACTTCGTCAAGCACTTTTCTGTC
CTGAAGCTTTGACCAGTATCTGCTGTCTTTTGTAATGATGCATCCTAGCTAAGGCACAGA
AGACTGAATGAATGCAAGGATTCATTAACTCTTTGAATTTGTTAAATACTAACAGTTAAC
CATTAGAAGTGGTTCAATGATGTAAGAGTCACACTGCTTCAACTTTTTCTTTGTTGTAGT
TTTTAAATTGTCAATTTTTAGCTATTTGACAGATTAAAAGCAAAATAATCATGCCATATT
TAGTCCTGGAGTTCAAGTCTAAATGTTTATGTGAAAATTATTGTAGTAAACTTTTAATAT
GGCAAAGCAACCTTAAGCTCTATTTTAGCCAAATGAAACATAATCTGAGATTATATTAGA
ACATTTCCCTTGTCTTCAAACTGTTTGGTGTAACAGAATATTGATATGCAGCTTGGTGAA
TTTCACCAGTTAATGCACATTCTTCTCCCCTCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTTTCCTTTCCTCCTTGACCCTACCTTAGCCATTAGTTTTCACATTGCTTCAGAGTA
CTTTTTAGTCTGTTTGATACCACGCCATTAAAAACTCATTGGAAGGGCTTGAAAGGCATT
ACAGTAATTGTCTTACCTAAACAAAATTCCATGGGAAAATAGGGCTGTGGAAAGGACCTG
TAATCTCCCAAACTAGGTCTTTGTTTGGATGTGTTTATTTTAAATTGGTTTGTGGTAATC
CCACTGAGGTTTATATTGATAATAGTAAATCAGTTTTAACTAATTACTTAAATTAGTATT
TGAAGATTTTTTTTTTTTGTTTTAAAGGAGAAAAAGATAGCTTTTGCCTTAAAGACTCTG
CCCCCTTGCTGGAAGGGGTTAGAAGGGTTTTATAGTTTAGGGAGTGGAAAATACGGTTGT
AGATAAGGATCAGGGTAGAAGCAAGGTAGAAGCAAGCTTGCATTGTCTTTCACAGCTGGT
ATTTAGTGGCTCCAGCACTGGTTCTGGTAGTCCTTCTTCCTGGTGTCTGAACCTGCTGAG
GTTCACGGTCTTTATGCCTCTGCACAGAAGGAATTCAGCAAGAGACAAAGTGATAGGCAA
GAAATAGATTTATTAAGATAGGACACTTATGAGAGATGCAGGTGGCAGGCAAGGAGGCTC
TGCCAGTATTTGAAGAACTTTGAATGGAGATGGTTTACATTATATGTGGATATAATTTAA
ATCATTAAATAATGGTGGTGCTTTGCTAAAGGTCTTTGTGTTTTTCTTTCAGGAGAGAAA
TAGAAACAAACAATAACCATGTGAAGATGTCCTGTTAGAATCACAACACTAATGATGTAG
ACTCTGGAAATGCCTAATAAGTCAAAGAAGACGTTATTACAGCTTTTTTCTGCTTAAGGT
GACATCTTTGAACTCTAACACAGATTGACTCTTCTTGTAATGGTTTTCATCAGCGCATCT
GCCCTTATACTTTCACCAAACACACTTGAGAACTGTAACTTCGTCAAGCACTTTTCTGTC
CTGAAGCTTTGACCAGTATCTGCTGTCTTTTGTAATGATGCATCCTAGCTAAGGCACAGA
AGACTGAATGAATGCAAGGATTCATTAACTCTTTGAATTTGTTAAATACTAACAGTTAAC
CATTAGAAGTGGTTCAATGATGTAAGAGTCACACTGCTTCAACTTTTTCTTTGTTGTAGT
TTTTAAATTGTCAATTTTTAGCTATTTGACAGATTAAAAGCAAAATAATCATGCCATATT
TAGTCCTGGAGTTCAAGTCTAAATGTTTATGTGAAAATTATTGTAGTAAACTTTTAATAT
GGCAAAGCAACCTTAAGCTCTATTTTAGCCAAATGAAACATAATCTGAGATTATATTAGA
ACATTTCCCTTGTCTTCAAACTGTTTGGTGTAACAGAATATTGATATGCAGCTTGGTGAA
TTTCACCAGTTAATGCACATTCTTCTCCCCTCCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1116-1235, + strand, RNAz p=0.954357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1116-1235, + strand, RNAz p=0.954357

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC052970, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC052970, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-313, gnl|bosTau2|chr14 (17413817-17413505)
               

               
               3-313, gnl|Hg17|chr8 (64284417-64284692)
               

               
               3-313, gnl|Mm7|chr3 (15924079-15924347)
               


               
               665-1476, gnl|bosTau2|chr14 (17413523-17412709)
               

               
               665-1476, gnl|Hg17|chr8 (64284677-64285501)
               

               
               665-1476, gnl|Mm7|chr3 (15924329-15925131)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-313, gnl|bosTau2|chr14 (17413817-17413505)
               

               
               3-313, gnl|Hg17|chr8 (64284417-64284692)
               

               
               3-313, gnl|Mm7|chr3 (15924079-15924347)
               


               
               665-1476, gnl|bosTau2|chr14 (17413523-17412709)
               

               
               665-1476, gnl|Hg17|chr8 (64284677-64285501)
               

               
               665-1476, gnl|Mm7|chr3 (15924329-15925131)

	3-313, gnl\|bosTau2\|chr14 (17413817-17413505)
	3-313, gnl\|Hg17\|chr8 (64284417-64284692)
	3-313, gnl\|Mm7\|chr3 (15924079-15924347)

	665-1476, gnl\|bosTau2\|chr14 (17413523-17412709)
	665-1476, gnl\|Hg17\|chr8 (64284677-64285501)
	665-1476, gnl\|Mm7\|chr3 (15924329-15925131)