Non-Coding RNA Search

Ss1.1-Pig4-TMW8022I23.5

Sequence:


               
               CCCAACTAGTCTGCTTCTCAAAAGTTCGCTCACTACCCCAGCTGTAGCTACATTTCCTTT
GGAAAGTGCTGCCTCTGAGGAGATGGCCCCTACAACTGTCCATGTTACCTCCACTCCTGC
ACCTACGGCCAGCACTTTTCTAGAAGGGGTTGTCTCTTTAGCTCTTAAAAGCCACCCAGC
CAAGCAGGGTACTTCCACTCTTAATACTTTACCATTGATCCCTCCAACCTCTGAAAGTTG
CCCTGTGACTTTATCTCCCCATAGTGTTTCTGCTTCTCCAGATACTATGGCACAGGTCCC
TGAAATTCCCAAGTCTGAGTCCTTTCTCCCTCTTCCTCCAGCTGGTACTCTTCAAGGTAC
AAAGAAAGTTCATAGTATTTCTCAGTTGGCACCTGTGGCTTCCTCTCCTGAAGGGTACCC
AGCTGAGGACTCTAGTACTTCTGTTACTGTGTCTTCCAAAGGAACTTACCTAGCTGACTC
TCCATCTCCTTCAGGGACTAGTGTGTCTCCTCAAACTAAAAGATCTCCAACCAAGAAGGG
TTCAGCTGCTTCTACCCTAAGTGTTACTCCTTCTGTTTCTAAAAGTGTACCTGCTATCCC
TGATAATGCTGCTGGAAATCTATCGTTTCCTATTTCTCCAGTTGAGGCTTCCTCTCTTCC
AGAAGCCAATCTTCCCTTTCCTGTCCCTGAAGGATCATTAGCCAAGAAGCATACCCCTAC
TCCTCCATCTTCAAAAGGAGCCCCAGATAACCCATCCCCCAAAGACACTCCCAATTCCCC
ACGTGTGGCTCCTCCTTCCCCTAGAGGGGAGCTGGCAACCCCATCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAACTAGTCTGCTTCTCAAAAGTTCGCTCACTACCCCAGCTGTAGCTACATTTCCTTT
GGAAAGTGCTGCCTCTGAGGAGATGGCCCCTACAACTGTCCATGTTACCTCCACTCCTGC
ACCTACGGCCAGCACTTTTCTAGAAGGGGTTGTCTCTTTAGCTCTTAAAAGCCACCCAGC
CAAGCAGGGTACTTCCACTCTTAATACTTTACCATTGATCCCTCCAACCTCTGAAAGTTG
CCCTGTGACTTTATCTCCCCATAGTGTTTCTGCTTCTCCAGATACTATGGCACAGGTCCC
TGAAATTCCCAAGTCTGAGTCCTTTCTCCCTCTTCCTCCAGCTGGTACTCTTCAAGGTAC
AAAGAAAGTTCATAGTATTTCTCAGTTGGCACCTGTGGCTTCCTCTCCTGAAGGGTACCC
AGCTGAGGACTCTAGTACTTCTGTTACTGTGTCTTCCAAAGGAACTTACCTAGCTGACTC
TCCATCTCCTTCAGGGACTAGTGTGTCTCCTCAAACTAAAAGATCTCCAACCAAGAAGGG
TTCAGCTGCTTCTACCCTAAGTGTTACTCCTTCTGTTTCTAAAAGTGTACCTGCTATCCC
TGATAATGCTGCTGGAAATCTATCGTTTCCTATTTCTCCAGTTGAGGCTTCCTCTCTTCC
AGAAGCCAATCTTCCCTTTCCTGTCCCTGAAGGATCATTAGCCAAGAAGCATACCCCTAC
TCCTCCATCTTCAAAAGGAGCCCCAGATAACCCATCCCCCAAAGACACTCCCAATTCCCC
ACGTGTGGCTCCTCCTTCCCCTAGAGGGGAGCTGGCAACCCCATCTCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               19-137, - strand, RNAz p=0.829347
               

               
               327-437, - strand, RNAz p=0.702483
               

               
               626-744, - strand, RNAz p=0.956959

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-137, - strand, RNAz p=0.829347
               

               
               327-437, - strand, RNAz p=0.702483
               

               
               626-744, - strand, RNAz p=0.956959

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               575-727, - strand, RNAmicro p=0.999473
               

               
               390-520, - strand, RNAmicro p=0.998448

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               575-727, - strand, RNAmicro p=0.999473
               

               
               390-520, - strand, RNAmicro p=0.998448

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-137, gnl|bosTau2|chr5 (33048265-33048401)
               

               
               1-137, gnl|hg17|chr12 (55399523-55399709)
               

               
               1-137, gnl|Hg17|chr12 (55399691-55399555)
               

               
               1-137, gnl|mm7|chr10 (127542297-127542209)
               

               
               1-137, gnl|monDom2|scaffold_277 (132069-132176)
               

               
               1-137, gnl|rn3|chr7 (1335577-1335459)
               


               
               189-744, gnl|bosTau2|chr5 (33048396-33048969)
               

               
               189-744, gnl|Hg17|chr12 (55399560-55398987)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr5 (33048265-33048401)
               

               
               1-137, gnl|hg17|chr12 (55399523-55399709)
               

               
               1-137, gnl|Hg17|chr12 (55399691-55399555)
               

               
               1-137, gnl|mm7|chr10 (127542297-127542209)
               

               
               1-137, gnl|monDom2|scaffold_277 (132069-132176)
               

               
               1-137, gnl|rn3|chr7 (1335577-1335459)
               


               
               189-744, gnl|bosTau2|chr5 (33048396-33048969)
               

               
               189-744, gnl|Hg17|chr12 (55399560-55398987)

	19-137, - strand, RNAz p=0.829347
	327-437, - strand, RNAz p=0.702483
	626-744, - strand, RNAz p=0.956959

	575-727, - strand, RNAmicro p=0.999473
	390-520, - strand, RNAmicro p=0.998448

	1-137, gnl\|bosTau2\|chr5 (33048265-33048401)
	1-137, gnl\|hg17\|chr12 (55399523-55399709)
	1-137, gnl\|Hg17\|chr12 (55399691-55399555)
	1-137, gnl\|mm7\|chr10 (127542297-127542209)
	1-137, gnl\|monDom2\|scaffold_277 (132069-132176)
	1-137, gnl\|rn3\|chr7 (1335577-1335459)

	189-744, gnl\|bosTau2\|chr5 (33048396-33048969)
	189-744, gnl\|Hg17\|chr12 (55399560-55398987)