Ss1.1-Pig4-TMW8022J20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGCCCCGCGGGACCGCGCCGCCGCTCGCCCAGGCGCTCCTGATCGCGCAGAGCTGAAG GAATGAGAAGGAGTCATGGAAGCCCAGTCCCACAGCTCCACGACCACTGAGAAGAAGAAA GTGGAGAATTCCATAGTGAAATGCTCCCCCCGAGCAGATGTCAGCGAGAAAGCCGTGGCC TCCAGCACCACTTCCAACGAGGATGAAAGTCCTGGACAGACGTATCACCGAGAGCGAAGA AACGCGGTCGCCATGCAGCCACAGAGCGTCCAGGGGCTCGGCAAGGTCAGCGAGGAGCCC TCGACTTCCAGCGACGAGAGGGCCTCGCTGATCAAGAAGGAGATCCATGGGTCCCTGCCG CACCTGGCCGAGCCCTCCGTCCCGTACCGCGGGGCCGTGTTTGCCATGGACCCCCGCAAC GGCTACATGGAGCCTCACTACCACCCTCCCCACCTCTTCCCTGCTTTCCACCCTCCGGTC CCCATCGACGCGAGACACCACGAGGGCCGTTACCACTACGATCCGTCTCCGGTTCCCCCG CTGCACGTGCCTTCTGCCTTGTCCAGCAGCCCCGCGTATTCAGACCTGCCCTTGTTCAGG ATCTCCCCGCATCGGAACCCCGCCGCAGCTTCCGAGTCCCCCTTCAGCCCGCCGCACCCC TACGTCAACCCTTACATGGACTACATCCGGTCTCTGCACAGCAGCCCGTCCCTGTCCATG ATCTCGGCCGCCCGCGGGCTGAGCCCCACAGACGCCCCCCACGCTGGAGTCAGCCCAGCG GAATACTATCACCAGATGGCTCTGTTGGCCGGCCAGCGCAGCCCCTATGCAGACATCATC CCCTCCGCTGCCACCGCCGGCGCCGGGGCCATCCACATGGAGTATCTCCACGCCATGGAT GGCACCAGATTCCCCAGCCCCAGGCTGTCAGCCAGGCCGAGCCGAAAACGCACACTGTCC ATATCACCGCTGTCGGATCATAGCTTTGACCTTCAGACCATGATAAGGACGTCTCCCAAC TCCTTGGTCACGATTCTCAATAATTCCCGCAGCAGCTCTTCAGCAAGTGGCTCCTATGGC CACTTATCTGCAAGTGCAATCAGCCCCGCCCTGAGCTTCACCTACCCTTCTGCGCCCGTC TCGCTCCACATGCATCAGCAGATCTTGAGCCGGCAGCAGAGCTTAGGCTCCGCCTTTGGA CACAGCCCGCCGCTCATCCACCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGCCCCGCGGGACCGCGCCGCCGCTCGCCCAGGCGCTCCTGATCGCGCAGAGCTGAAG GAATGAGAAGGAGTCATGGAAGCCCAGTCCCACAGCTCCACGACCACTGAGAAGAAGAAA GTGGAGAATTCCATAGTGAAATGCTCCCCCCGAGCAGATGTCAGCGAGAAAGCCGTGGCC TCCAGCACCACTTCCAACGAGGATGAAAGTCCTGGACAGACGTATCACCGAGAGCGAAGA AACGCGGTCGCCATGCAGCCACAGAGCGTCCAGGGGCTCGGCAAGGTCAGCGAGGAGCCC TCGACTTCCAGCGACGAGAGGGCCTCGCTGATCAAGAAGGAGATCCATGGGTCCCTGCCG CACCTGGCCGAGCCCTCCGTCCCGTACCGCGGGGCCGTGTTTGCCATGGACCCCCGCAAC GGCTACATGGAGCCTCACTACCACCCTCCCCACCTCTTCCCTGCTTTCCACCCTCCGGTC CCCATCGACGCGAGACACCACGAGGGCCGTTACCACTACGATCCGTCTCCGGTTCCCCCG CTGCACGTGCCTTCTGCCTTGTCCAGCAGCCCCGCGTATTCAGACCTGCCCTTGTTCAGG ATCTCCCCGCATCGGAACCCCGCCGCAGCTTCCGAGTCCCCCTTCAGCCCGCCGCACCCC TACGTCAACCCTTACATGGACTACATCCGGTCTCTGCACAGCAGCCCGTCCCTGTCCATG ATCTCGGCCGCCCGCGGGCTGAGCCCCACAGACGCCCCCCACGCTGGAGTCAGCCCAGCG GAATACTATCACCAGATGGCTCTGTTGGCCGGCCAGCGCAGCCCCTATGCAGACATCATC CCCTCCGCTGCCACCGCCGGCGCCGGGGCCATCCACATGGAGTATCTCCACGCCATGGAT GGCACCAGATTCCCCAGCCCCAGGCTGTCAGCCAGGCCGAGCCGAAAACGCACACTGTCC ATATCACCGCTGTCGGATCATAGCTTTGACCTTCAGACCATGATAAGGACGTCTCCCAAC TCCTTGGTCACGATTCTCAATAATTCCCGCAGCAGCTCTTCAGCAAGTGGCTCCTATGGC CACTTATCTGCAAGTGCAATCAGCCCCGCCCTGAGCTTCACCTACCCTTCTGCGCCCGTC TCGCTCCACATGCATCAGCAGATCTTGAGCCGGCAGCAGAGCTTAGGCTCCGCCTTTGGA CACAGCCCGCCGCTCATCCACCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 238-397, - strand, RNAz p=0.93869 | |
| 628-752, - strand, RNAz p=0.784438 | |
| 783-900, - strand, RNAz p=0.97721 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 238-397, - strand, RNAz p=0.93869 | |
| 628-752, - strand, RNAz p=0.784438 | |
| 783-900, - strand, RNAz p=0.97721 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 32-197, gnl|bosTau2|chr4 (46113089-46113253) | |
| 32-197, gnl|canFam2|chr18 (10800615-10800451) | |
| 32-197, gnl|danRer3|chrUn (142718274-142718102) | |
| 32-197, gnl|dasNov1|scaffold_18488 (21061-21224) | |
| 32-197, gnl|echTel1|scaffold_308115 (43963-44126) | |
| 32-197, gnl|fr1|chrUn (3653989-3653828) | |
| 32-197, gnl|galGal2|chr2 (49997761-49997924) | |
| 32-197, gnl|hg17|chr7 (42035952-42036115) | |
| 32-197, gnl|Hg17|chr7 (42036136-42035971) | |
| 32-197, gnl|loxAfr1|scaffold_1115 (86813-86976) | |
| 32-197, gnl|mm7|chr13 (14844406-14844243) | |
| 32-197, gnl|Mm7|chr13 (14844220-14844385) | |
| 32-197, gnl|monDom2|scaffold_142 (1263513-1263350) | |
| 32-197, gnl|oryCun1|scaffold_165322 (2989-2826) | |
| 32-197, gnl|panTro1|chr6 (42209555-42209392) | |
| 32-197, gnl|rheMac2|chr3 (84100620-84100457) | |
| 32-197, gnl|rn3|chr17 (57856448-57856611) | |
| 32-197, gnl|tetNig1|chr6 (5079807-5079649) | |
| 32-197, gnl|xenTro1|scaffold_26 (330569-330406) | |
| 199-440, gnl|bosTau2|chr4 (45612005-45612246) | |
| 199-440, gnl|Hg17|chr7 (41961308-41961067) | |
| 199-440, gnl|Mm7|chr13 (14914497-14914738) | |
| 549-752, gnl|bosTau2|chr4 (45722233-45722436) | |
| 549-752, gnl|canFam2|chr18 (10971668-10971421) | |
| 549-752, gnl|danRer3|chrUn (142858158-142857932) | |
| 549-752, gnl|dasNov1|scaffold_163 (145728-145974) | |
| 549-752, gnl|echTel1|scaffold_315852 (7840-7596) | |
| 549-752, gnl|fr1|chrUn (229474397-229474613) | |
| 549-752, gnl|galGal2|chr2 (49872243-49872496) | |
| 549-752, gnl|hg17|chr7 (41861305-41861549) | |
| 549-752, gnl|Hg17|chr7 (41861535-41861332) | |
| 549-752, gnl|loxAfr1|scaffold_2543 (97627-97383) | |
| 549-752, gnl|mm7|chr13 (15008115-15007879) | |
| 549-752, gnl|Mm7|chr13 (15007891-15008094) | |
| 549-752, gnl|panTro1|chr6 (42385102-42384858) | |
| 549-752, gnl|rheMac2|chr3 (84278283-84278039) | |
| 549-752, gnl|rn3|chr17 (57689287-57689523) | |
| 549-752, gnl|tetNig1|chr6 (5117966-5117752) | |
| 549-752, gnl|xenTro1|scaffold_26 (401004-400765) | |
| 754-900, gnl|bosTau2|chr4 (45727202-45727348) | |
| 754-900, gnl|Hg17|chr7 (41858370-41858224) | |
| 754-900, gnl|Mm7|chr13 (15011115-15011261) | |
| 901-1103, gnl|bosTau2|chr4 (45732233-45732435) | |
| 901-1103, gnl|canFam2|chr18 (10980263-10980019) | |
| 901-1103, gnl|danRer3|chrUn (142888455-142888218) | |
| 901-1103, gnl|dasNov1|scaffold_163 (137153-137397) | |
| 901-1103, gnl|echTel1|scaffold_315852 (17906-17662) | |
| 901-1103, gnl|fr1|chrUn (229469283-229469513) | |
| 901-1103, gnl|galGal2|chr2 (49858278-49858511) | |
| 901-1103, gnl|hg17|chr7 (41852864-41853108) | |
| 901-1103, gnl|Hg17|chr7 (41853079-41852877) | |
| 901-1103, gnl|loxAfr1|scaffold_2543 (108333-108089) | |
| 901-1103, gnl|mm7|chr13 (15015559-15015315) | |
| 901-1103, gnl|Mm7|chr13 (15015342-15015544) | |
| 901-1103, gnl|monDom2|scaffold_142 (1448442-1448198) | |
| 901-1103, gnl|oryCun1|scaffold_204923 (139651-139407) | |
| 901-1103, gnl|panTro1|chr6 (42393599-42393355) | |
| 901-1103, gnl|rheMac2|chr3 (84286908-84286664) | |
| 901-1103, gnl|rn3|chr17 (57681987-57682231) | |
| 901-1103, gnl|tetNig1|chr6 (5123060-5122845) | |
| 901-1103, gnl|xenTro1|scaffold_26 (410398-410180) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-197, gnl|bosTau2|chr4 (46113089-46113253) | |
| 32-197, gnl|canFam2|chr18 (10800615-10800451) | |
| 32-197, gnl|danRer3|chrUn (142718274-142718102) | |
| 32-197, gnl|dasNov1|scaffold_18488 (21061-21224) | |
| 32-197, gnl|echTel1|scaffold_308115 (43963-44126) | |
| 32-197, gnl|fr1|chrUn (3653989-3653828) | |
| 32-197, gnl|galGal2|chr2 (49997761-49997924) | |
| 32-197, gnl|hg17|chr7 (42035952-42036115) | |
| 32-197, gnl|Hg17|chr7 (42036136-42035971) | |
| 32-197, gnl|loxAfr1|scaffold_1115 (86813-86976) | |
| 32-197, gnl|mm7|chr13 (14844406-14844243) | |
| 32-197, gnl|Mm7|chr13 (14844220-14844385) | |
| 32-197, gnl|monDom2|scaffold_142 (1263513-1263350) | |
| 32-197, gnl|oryCun1|scaffold_165322 (2989-2826) | |
| 32-197, gnl|panTro1|chr6 (42209555-42209392) | |
| 32-197, gnl|rheMac2|chr3 (84100620-84100457) | |
| 32-197, gnl|rn3|chr17 (57856448-57856611) | |
| 32-197, gnl|tetNig1|chr6 (5079807-5079649) | |
| 32-197, gnl|xenTro1|scaffold_26 (330569-330406) | |
| 199-440, gnl|bosTau2|chr4 (45612005-45612246) | |
| 199-440, gnl|Hg17|chr7 (41961308-41961067) | |
| 199-440, gnl|Mm7|chr13 (14914497-14914738) | |
| 549-752, gnl|bosTau2|chr4 (45722233-45722436) | |
| 549-752, gnl|canFam2|chr18 (10971668-10971421) | |
| 549-752, gnl|danRer3|chrUn (142858158-142857932) | |
| 549-752, gnl|dasNov1|scaffold_163 (145728-145974) | |
| 549-752, gnl|echTel1|scaffold_315852 (7840-7596) | |
| 549-752, gnl|fr1|chrUn (229474397-229474613) | |
| 549-752, gnl|galGal2|chr2 (49872243-49872496) | |
| 549-752, gnl|hg17|chr7 (41861305-41861549) | |
| 549-752, gnl|Hg17|chr7 (41861535-41861332) | |
| 549-752, gnl|loxAfr1|scaffold_2543 (97627-97383) | |
| 549-752, gnl|mm7|chr13 (15008115-15007879) | |
| 549-752, gnl|Mm7|chr13 (15007891-15008094) | |
| 549-752, gnl|panTro1|chr6 (42385102-42384858) | |
| 549-752, gnl|rheMac2|chr3 (84278283-84278039) | |
| 549-752, gnl|rn3|chr17 (57689287-57689523) | |
| 549-752, gnl|tetNig1|chr6 (5117966-5117752) | |
| 549-752, gnl|xenTro1|scaffold_26 (401004-400765) | |
| 754-900, gnl|bosTau2|chr4 (45727202-45727348) | |
| 754-900, gnl|Hg17|chr7 (41858370-41858224) | |
| 754-900, gnl|Mm7|chr13 (15011115-15011261) | |
| 901-1103, gnl|bosTau2|chr4 (45732233-45732435) | |
| 901-1103, gnl|canFam2|chr18 (10980263-10980019) | |
| 901-1103, gnl|danRer3|chrUn (142888455-142888218) | |
| 901-1103, gnl|dasNov1|scaffold_163 (137153-137397) | |
| 901-1103, gnl|echTel1|scaffold_315852 (17906-17662) | |
| 901-1103, gnl|fr1|chrUn (229469283-229469513) | |
| 901-1103, gnl|galGal2|chr2 (49858278-49858511) | |
| 901-1103, gnl|hg17|chr7 (41852864-41853108) | |
| 901-1103, gnl|Hg17|chr7 (41853079-41852877) | |
| 901-1103, gnl|loxAfr1|scaffold_2543 (108333-108089) | |
| 901-1103, gnl|mm7|chr13 (15015559-15015315) | |
| 901-1103, gnl|Mm7|chr13 (15015342-15015544) | |
| 901-1103, gnl|monDom2|scaffold_142 (1448442-1448198) | |
| 901-1103, gnl|oryCun1|scaffold_204923 (139651-139407) | |
| 901-1103, gnl|panTro1|chr6 (42393599-42393355) | |
| 901-1103, gnl|rheMac2|chr3 (84286908-84286664) | |
| 901-1103, gnl|rn3|chr17 (57681987-57682231) | |
| 901-1103, gnl|tetNig1|chr6 (5123060-5122845) | |
| 901-1103, gnl|xenTro1|scaffold_26 (410398-410180) |