Non-Coding RNA Search

Ss1.1-Pig4-TMW8022K06.5

Sequence:


               
               GCGAGGTGGCGGGGACACCCACCGTGCCTTTCCGGAGCCCTGACGCCCCAGCCCCGGCTC
ATTCTCTGTGACAGTGTGTCCCCGTCTGTGGGAGAGGCGATCTTGGGCCTCGTCTTTGCC
GGGCGCCGCCTGGGCACGTGCTCCGGGACCTCTTCCGCTTCTGTCGTCAAGGCCTCCGAA
GGCAGCGTCTGCGGCCTTGCGAGAGTGTTGACATCATTCTATAGCGCGGTTCGGGGTGCG
GCACGCAGCCCGAGGTGACCCTGTCCTGGTCTCCTTCCTTTCAGGGCTCCATTTAGCCCA
CTGTCCCGTTGCGGTAGCAGGTGCGGCAGCACTGATGAATCCGGCGCAGGGCTGCGTGAC
CTTCGAGGACGTGTTCGTGTACTTCTCCCGGGAGGAGTGGGAGCTCCTTGAAGAAGCTCA
GAGACTTCTGTACCGCGACGTGATGCTGGAGAACTTTGCGCTTGTGTCATCGCTGGGACT
TGCGGTTTCCAGGTCTCCCGGAGCTTCTGAGCTGGAGCCCGAGGGGAGCTCAGGGTACCT
GAGAAGATAGACACACAGCTCCAGTCACAGCAAAGCAGAAGGAGGAGGCCTGGCCCTGGT
GAGCGGAAGGCTGTGTGCACGGCGTGGACCATGTGGCTGCACCTTCCGAACTGGGAGTTG
CTGGAAGAGCGTCACAGATAAGAACTCTCAAGACAGGTCCTTCTGCCCGTGAGCCTCACC
CCCGAGACATGCGCAGCCCAGTCTTGAAAGACATTTTTGCCCCTGGCTGAGCCACGTGGA
GCACTATCTGGGCGACACCCGGACTCCAGCAAGTGAGTCATTTTGGGGAGACTTCTGTGC
ACTTGAAACCGTGACCAGATGCAGAAGCAGCAGAGTGGATCCTGCAGAAGGGACAGTCCA
GGCCTCGTGTGTGATGAGCTGCATATCCTGTATATCAGTGAAAGCCTTCGCTGGCAGGGA
AGGTAGAGAAGCCACACTGGAGTATCGGGAGGTGCTCTTCTGCCGGTGTCACTAAGAGGC
CCCTTTGGATGTTGGATTCCTCAGAGGCGAGGAACGCGCAACCTGAGGCTGTAAAGCCTT
GTGCTTCTCCGCTGCCCTGGTGGGAGGGCACGTCTCCATGGTCAGTTGACTGAGGCACCA
GGTTGGGGAACCATTAGCGATGCAGGGGTTGCTCATGAACCCAGGGCTGCTTTCCCCCAA
GGAGACTCTCGGCAGGACGATGAGCTCTGAACCCAGGGCCATGGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGTGGCGGGGACACCCACCGTGCCTTTCCGGAGCCCTGACGCCCCAGCCCCGGCTC
ATTCTCTGTGACAGTGTGTCCCCGTCTGTGGGAGAGGCGATCTTGGGCCTCGTCTTTGCC
GGGCGCCGCCTGGGCACGTGCTCCGGGACCTCTTCCGCTTCTGTCGTCAAGGCCTCCGAA
GGCAGCGTCTGCGGCCTTGCGAGAGTGTTGACATCATTCTATAGCGCGGTTCGGGGTGCG
GCACGCAGCCCGAGGTGACCCTGTCCTGGTCTCCTTCCTTTCAGGGCTCCATTTAGCCCA
CTGTCCCGTTGCGGTAGCAGGTGCGGCAGCACTGATGAATCCGGCGCAGGGCTGCGTGAC
CTTCGAGGACGTGTTCGTGTACTTCTCCCGGGAGGAGTGGGAGCTCCTTGAAGAAGCTCA
GAGACTTCTGTACCGCGACGTGATGCTGGAGAACTTTGCGCTTGTGTCATCGCTGGGACT
TGCGGTTTCCAGGTCTCCCGGAGCTTCTGAGCTGGAGCCCGAGGGGAGCTCAGGGTACCT
GAGAAGATAGACACACAGCTCCAGTCACAGCAAAGCAGAAGGAGGAGGCCTGGCCCTGGT
GAGCGGAAGGCTGTGTGCACGGCGTGGACCATGTGGCTGCACCTTCCGAACTGGGAGTTG
CTGGAAGAGCGTCACAGATAAGAACTCTCAAGACAGGTCCTTCTGCCCGTGAGCCTCACC
CCCGAGACATGCGCAGCCCAGTCTTGAAAGACATTTTTGCCCCTGGCTGAGCCACGTGGA
GCACTATCTGGGCGACACCCGGACTCCAGCAAGTGAGTCATTTTGGGGAGACTTCTGTGC
ACTTGAAACCGTGACCAGATGCAGAAGCAGCAGAGTGGATCCTGCAGAAGGGACAGTCCA
GGCCTCGTGTGTGATGAGCTGCATATCCTGTATATCAGTGAAAGCCTTCGCTGGCAGGGA
AGGTAGAGAAGCCACACTGGAGTATCGGGAGGTGCTCTTCTGCCGGTGTCACTAAGAGGC
CCCTTTGGATGTTGGATTCCTCAGAGGCGAGGAACGCGCAACCTGAGGCTGTAAAGCCTT
GTGCTTCTCCGCTGCCCTGGTGGGAGGGCACGTCTCCATGGTCAGTTGACTGAGGCACCA
GGTTGGGGAACCATTAGCGATGCAGGGGTTGCTCATGAACCCAGGGCTGCTTTCCCCCAA
GGAGACTCTCGGCAGGACGATGAGCTCTGAACCCAGGGCCATGGGGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61873832|ref|XP_597530.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873832|ref|XP_597530.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1046-1155, + strand, RNAz p=0.550481

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1046-1155, + strand, RNAz p=0.550481

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-218, gnl|bosTau2|chr18 (53602341-53602121)
               


               
               346-477, gnl|bosTau2|chr18 (53601240-53601109)
               

               
               346-477, gnl|Hg17|chr19 (62556901-62557032)
               

               
               346-477, gnl|Mm7|chr7 (11046222-11046094)
               


               
               608-780, gnl|bosTau2|chr18 (53599541-53599369)
               

               
               608-780, gnl|Hg17|chr19 (62559208-62559376)
               


               
               966-1236, gnl|bosTau2|chr18 (53599166-53598891)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr18 (53602341-53602121)
               


               
               346-477, gnl|bosTau2|chr18 (53601240-53601109)
               

               
               346-477, gnl|Hg17|chr19 (62556901-62557032)
               

               
               346-477, gnl|Mm7|chr7 (11046222-11046094)
               


               
               608-780, gnl|bosTau2|chr18 (53599541-53599369)
               

               
               608-780, gnl|Hg17|chr19 (62559208-62559376)
               


               
               966-1236, gnl|bosTau2|chr18 (53599166-53598891)

	1-218, gnl\|bosTau2\|chr18 (53602341-53602121)

	346-477, gnl\|bosTau2\|chr18 (53601240-53601109)
	346-477, gnl\|Hg17\|chr19 (62556901-62557032)
	346-477, gnl\|Mm7\|chr7 (11046222-11046094)

	608-780, gnl\|bosTau2\|chr18 (53599541-53599369)
	608-780, gnl\|Hg17\|chr19 (62559208-62559376)

	966-1236, gnl\|bosTau2\|chr18 (53599166-53598891)