Non-Coding RNA Search

Ss1.1-Pig4-TMW8022N08.3

Sequence:


               
               TTTAAACCATCACTTCTTTATTCTTATTTAGAAATAATCAGAATCTATATCTTCCGTTCC
CCAACAAGACAGAACTGCTGCTTGCTTTGACTTCCCTCTCCTTTCTGTTCTCTCTTCGAC
TTCCTATGTTGAAATCATGTAAGTATTTTAGTTCTGGATTGCTTATTTCCTAAAAGTCAG
CATGTATTGCTTCCTGTGCTTATCATTGTTTATTATGGCTCATATATTCTTGGATGCTTT
AAAAAATTGTGTTGGAGTACATCTACTAATTATTTCAGAGAAGATCTTTGAACAGTAAAT
ACTGAGCTCTCTCATGTGTGAAAATGTCTTTCTTCTGCACTCCCGTGAAAGCTGATTTGG
TTGGATGTGAGTTTCACATTGTTTTCCTTATAACTTTGCCATTGCTCTTTTGTTTTCTAG
CATCTGTGCTGCTGATGAAAAGTCTAATTTTACCTTTGTGTGATTTATGTGTCTTCGTAG
GAATTCACTTTTCTCCTTTGGAAGTTTTTAAGATTTCCTGTAATTTCAGTAGGATGTGAC
TATGAGTTTCCCCTTTCTCCAATTATTAACTCCATTTAACACTTAGTGGATCTTTCAGTC
CGGTGATTCCTGTCCTCACCTGTCTCCCCCAGAGAATTTCTAGAACTCACATAACATAGA
CGTTGGACTTTGTGGTTCTGTGTTCTGTATATCTACCTTTCTTTCATACTCAAGAGGCAT
TTTGGGAGCATTTCTTAGTTTTGTTTTCCATTCTTTTTTTTTTCTGTGCCCATTTTGTTG
TTAAATTATCTGTTGAATTTTATTTTGGAAATGAGTATGTTTTTTCTTTTCTAAAAGTGT
CTTTATTGGATATAATTTGCATACAATAAAATATATCCACTTAAAGTATATGGTTCCATG
TGTTTTGACAGAGAGCTACTCCTGTGAAGCTTCCCTCTCACCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAACCATCACTTCTTTATTCTTATTTAGAAATAATCAGAATCTATATCTTCCGTTCC
CCAACAAGACAGAACTGCTGCTTGCTTTGACTTCCCTCTCCTTTCTGTTCTCTCTTCGAC
TTCCTATGTTGAAATCATGTAAGTATTTTAGTTCTGGATTGCTTATTTCCTAAAAGTCAG
CATGTATTGCTTCCTGTGCTTATCATTGTTTATTATGGCTCATATATTCTTGGATGCTTT
AAAAAATTGTGTTGGAGTACATCTACTAATTATTTCAGAGAAGATCTTTGAACAGTAAAT
ACTGAGCTCTCTCATGTGTGAAAATGTCTTTCTTCTGCACTCCCGTGAAAGCTGATTTGG
TTGGATGTGAGTTTCACATTGTTTTCCTTATAACTTTGCCATTGCTCTTTTGTTTTCTAG
CATCTGTGCTGCTGATGAAAAGTCTAATTTTACCTTTGTGTGATTTATGTGTCTTCGTAG
GAATTCACTTTTCTCCTTTGGAAGTTTTTAAGATTTCCTGTAATTTCAGTAGGATGTGAC
TATGAGTTTCCCCTTTCTCCAATTATTAACTCCATTTAACACTTAGTGGATCTTTCAGTC
CGGTGATTCCTGTCCTCACCTGTCTCCCCCAGAGAATTTCTAGAACTCACATAACATAGA
CGTTGGACTTTGTGGTTCTGTGTTCTGTATATCTACCTTTCTTTCATACTCAAGAGGCAT
TTTGGGAGCATTTCTTAGTTTTGTTTTCCATTCTTTTTTTTTTCTGTGCCCATTTTGTTG
TTAAATTATCTGTTGAATTTTATTTTGGAAATGAGTATGTTTTTTCTTTTCTAAAAGTGT
CTTTATTGGATATAATTTGCATACAATAAAATATATCCACTTAAAGTATATGGTTCCATG
TGTTTTGACAGAGAGCTACTCCTGTGAAGCTTCCCTCTCACCCCCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               613-707, + strand, RNAz p=0.575497

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               613-707, + strand, RNAz p=0.575497

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-560, gnl|bosTau2|chr13 (33888929-33889486)
               

               
               1-560, gnl|Hg17|chr20 (3830124-3830744)
               

               
               1-560, gnl|Mm7|chr2 (131012379-131012852)
               


               
               613-947, gnl|bosTau2|chr13 (33889473-33889805)
               

               
               613-947, gnl|Hg17|chr20 (3830733-3831680)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr13 (33888929-33889486)
               

               
               1-560, gnl|Hg17|chr20 (3830124-3830744)
               

               
               1-560, gnl|Mm7|chr2 (131012379-131012852)
               


               
               613-947, gnl|bosTau2|chr13 (33889473-33889805)
               

               
               613-947, gnl|Hg17|chr20 (3830733-3831680)

	1-560, gnl\|bosTau2\|chr13 (33888929-33889486)
	1-560, gnl\|Hg17\|chr20 (3830124-3830744)
	1-560, gnl\|Mm7\|chr2 (131012379-131012852)

	613-947, gnl\|bosTau2\|chr13 (33889473-33889805)
	613-947, gnl\|Hg17\|chr20 (3830733-3831680)