Ss1.1-Pig4-TMW8022P08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGGGGGGGATCATGAAGCAGACAGCTGGGGCAGTCAGCTTGTTCCCTGCACTGTCCG TGAGGTCCCAGCTCTCCCCGTTGTTCTTCTGCAGAGTGTAGCTGTAGCCCCGAGAGATCA GGCCCTGGTCACTCTCGAAGTCACAGAGCGCTTCCACAGGGAGGGGCTTGAGTGGCGTCT CCCGGCGGTACTTGAGGGGCACCACCTGCTGCCCTCGCTTCTGCAGGCCCCGCACCACGT GCTCGTACTTGTCCAGAGCCTTCTCCTGGTCATCCAACTCGTGCAGCAGCAACTCAATCT GGTATCGGTCTTTGAAGTCAGGGCTATATTTCTGGTTCAGATCCGAGTCCACCTTGCGCA GCAGCTCCTGGGCATCCTTCATGTCTTTGTGGAACTGGTGGTAGTCTTCCATGTACTTCA GGTGGCTCTCCTCACAGATGAGCAGGTTCAGGTACTCCTTCCAATCTGCATGCACGGCCT CCATGTGAGCCTCAATGGAGTTCCTCCCCGGGTGCTCGGCGGCAAGCAGCTGCTCCCCCT CGCTGTGCAGCTTGTTGATTCTCTCCTCTTTGGCTTCCAGGTTCCGGTTGATGAAATTCT CGTACTGGCGCCGGCGGCTGGGGTAGTCAAGGTTGCGGTCACTCCAGTCATACTGCATGC GGCCCTGTGCCTGCTGGTCCAGCCAGTACAGCTCGTTGGTGCAGCGCTGCATGTAGTCCT GCAGCGAGCTCAGGTGCTGCTGCCGCGCCTGCGACGCCGCCAGTAGCTTCTGGTACTTGG CCTGCAGTTCGCTGTTCGGCTCCTTGCCCCCGTCCTTGGCCAGGTGGGGCCCGATGGCCT TGACCTCATTGTGGAAAATGTTATGCTGCTCCACCTGGTGGTCCACCAGCGGCAGGTCCG TCCCGAAGCTCTGGCTGCTTAGCTTGTCCAGCTTTTCCTCCACCAGGGCCTCCCAGTTGA CCTGCGGGTCCACCTCCTTCACCGCCAGGCTGTAGATCTGCTTGTGTTTCCCGCGGAGGT TGGTCACACGCTCCTTCAGCTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGGGGGGGATCATGAAGCAGACAGCTGGGGCAGTCAGCTTGTTCCCTGCACTGTCCG TGAGGTCCCAGCTCTCCCCGTTGTTCTTCTGCAGAGTGTAGCTGTAGCCCCGAGAGATCA GGCCCTGGTCACTCTCGAAGTCACAGAGCGCTTCCACAGGGAGGGGCTTGAGTGGCGTCT CCCGGCGGTACTTGAGGGGCACCACCTGCTGCCCTCGCTTCTGCAGGCCCCGCACCACGT GCTCGTACTTGTCCAGAGCCTTCTCCTGGTCATCCAACTCGTGCAGCAGCAACTCAATCT GGTATCGGTCTTTGAAGTCAGGGCTATATTTCTGGTTCAGATCCGAGTCCACCTTGCGCA GCAGCTCCTGGGCATCCTTCATGTCTTTGTGGAACTGGTGGTAGTCTTCCATGTACTTCA GGTGGCTCTCCTCACAGATGAGCAGGTTCAGGTACTCCTTCCAATCTGCATGCACGGCCT CCATGTGAGCCTCAATGGAGTTCCTCCCCGGGTGCTCGGCGGCAAGCAGCTGCTCCCCCT CGCTGTGCAGCTTGTTGATTCTCTCCTCTTTGGCTTCCAGGTTCCGGTTGATGAAATTCT CGTACTGGCGCCGGCGGCTGGGGTAGTCAAGGTTGCGGTCACTCCAGTCATACTGCATGC GGCCCTGTGCCTGCTGGTCCAGCCAGTACAGCTCGTTGGTGCAGCGCTGCATGTAGTCCT GCAGCGAGCTCAGGTGCTGCTGCCGCGCCTGCGACGCCGCCAGTAGCTTCTGGTACTTGG CCTGCAGTTCGCTGTTCGGCTCCTTGCCCCCGTCCTTGGCCAGGTGGGGCCCGATGGCCT TGACCTCATTGTGGAAAATGTTATGCTGCTCCACCTGGTGGTCCACCAGCGGCAGGTCCG TCCCGAAGCTCTGGCTGCTTAGCTTGTCCAGCTTTTCCTCCACCAGGGCCTCCCAGTTGA CCTGCGGGTCCACCTCCTTCACCGCCAGGCTGTAGATCTGCTTGTGTTTCCCGCGGAGGT TGGTCACACGCTCCTTCAGCTGAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 599-766, - strand, RNAz p=0.836329 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 599-766, - strand, RNAz p=0.836329 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 124-271, gnl|bosTau2|chr25 (4782973-4783120) | |
| 124-271, gnl|canFam2|chr6 (39571588-39571437) | |
| 124-271, gnl|danRer3|chr3 (32611381-32611230) | |
| 124-271, gnl|dasNov1|scaffold_22862 (10166-10018) | |
| 124-271, gnl|echTel1|scaffold_235152 (5731-5882) | |
| 124-271, gnl|fr1|chrUn (297238687-297238838) | |
| 124-271, gnl|galGal2|chr14 (1828618-1828468) | |
| 124-271, gnl|hg17|chr16 (4885262-4885413) | |
| 124-271, gnl|Hg17|chr16 (4885262-4885409) | |
| 124-271, gnl|loxAfr1|scaffold_2336 (85208-85359) | |
| 124-271, gnl|mm7|chr16 (4775564-4775715) | |
| 124-271, gnl|Mm7|chr16 (4775564-4775711) | |
| 124-271, gnl|monDom2|scaffold_17 (42573805-42573654) | |
| 124-271, gnl|panTro1|chr18 (4837185-4837336) | |
| 124-271, gnl|rheMac2|chr20 (5067286-5067437) | |
| 124-271, gnl|rn3|chr10 (10597329-10597178) | |
| 124-271, gnl|tetNig1|chrUn_random (36608343-36608494) | |
| 124-271, gnl|xenTro1|scaffold_409 (236415-236264) | |
| 599-766, gnl|bosTau2|chr25 (4786209-4786376) | |
| 599-766, gnl|canFam2|chr6 (39568390-39568260) | |
| 599-766, gnl|danRer3|chr3 (32608353-32608217) | |
| 599-766, gnl|dasNov1|scaffold_178302 (133-4) | |
| 599-766, gnl|fr1|chrUn (297240265-297240393) | |
| 599-766, gnl|galGal2|chr18 (4377424-4377296) | |
| 599-766, gnl|hg17|chr16 (4889217-4889345) | |
| 599-766, gnl|Hg17|chr16 (4889225-4889392) | |
| 599-766, gnl|loxAfr1|scaffold_2336 (87772-87900) | |
| 599-766, gnl|mm7|chr16 (4778127-4778255) | |
| 599-766, gnl|Mm7|chr16 (4778135-4778302) | |
| 599-766, gnl|monDom2|scaffold_17 (42569666-42569545) | |
| 599-766, gnl|oryCun1|scaffold_64249 (1732-1859) | |
| 599-766, gnl|panTro1|chr18 (4841143-4841271) | |
| 599-766, gnl|rheMac2|chr20 (5071284-5071412) | |
| 599-766, gnl|rn3|chr10 (10594718-10594590) | |
| 599-766, gnl|tetNig1|chrUn_random (36609497-36609625) | |
| 599-766, gnl|xenTro1|scaffold_409 (233389-233261) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-271, gnl|bosTau2|chr25 (4782973-4783120) | |
| 124-271, gnl|canFam2|chr6 (39571588-39571437) | |
| 124-271, gnl|danRer3|chr3 (32611381-32611230) | |
| 124-271, gnl|dasNov1|scaffold_22862 (10166-10018) | |
| 124-271, gnl|echTel1|scaffold_235152 (5731-5882) | |
| 124-271, gnl|fr1|chrUn (297238687-297238838) | |
| 124-271, gnl|galGal2|chr14 (1828618-1828468) | |
| 124-271, gnl|hg17|chr16 (4885262-4885413) | |
| 124-271, gnl|Hg17|chr16 (4885262-4885409) | |
| 124-271, gnl|loxAfr1|scaffold_2336 (85208-85359) | |
| 124-271, gnl|mm7|chr16 (4775564-4775715) | |
| 124-271, gnl|Mm7|chr16 (4775564-4775711) | |
| 124-271, gnl|monDom2|scaffold_17 (42573805-42573654) | |
| 124-271, gnl|panTro1|chr18 (4837185-4837336) | |
| 124-271, gnl|rheMac2|chr20 (5067286-5067437) | |
| 124-271, gnl|rn3|chr10 (10597329-10597178) | |
| 124-271, gnl|tetNig1|chrUn_random (36608343-36608494) | |
| 124-271, gnl|xenTro1|scaffold_409 (236415-236264) | |
| 599-766, gnl|bosTau2|chr25 (4786209-4786376) | |
| 599-766, gnl|canFam2|chr6 (39568390-39568260) | |
| 599-766, gnl|danRer3|chr3 (32608353-32608217) | |
| 599-766, gnl|dasNov1|scaffold_178302 (133-4) | |
| 599-766, gnl|fr1|chrUn (297240265-297240393) | |
| 599-766, gnl|galGal2|chr18 (4377424-4377296) | |
| 599-766, gnl|hg17|chr16 (4889217-4889345) | |
| 599-766, gnl|Hg17|chr16 (4889225-4889392) | |
| 599-766, gnl|loxAfr1|scaffold_2336 (87772-87900) | |
| 599-766, gnl|mm7|chr16 (4778127-4778255) | |
| 599-766, gnl|Mm7|chr16 (4778135-4778302) | |
| 599-766, gnl|monDom2|scaffold_17 (42569666-42569545) | |
| 599-766, gnl|oryCun1|scaffold_64249 (1732-1859) | |
| 599-766, gnl|panTro1|chr18 (4841143-4841271) | |
| 599-766, gnl|rheMac2|chr20 (5071284-5071412) | |
| 599-766, gnl|rn3|chr10 (10594718-10594590) | |
| 599-766, gnl|tetNig1|chrUn_random (36609497-36609625) | |
| 599-766, gnl|xenTro1|scaffold_409 (233389-233261) |