Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B19.5

Sequence:


               
               TCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTGGGCGAGGAAGAAAGCTTTTCAG
AAGGTGCATTAGAGTTCACAACAGTGCCCTCTGCTGTCCAAGTGGTGGCTGAGCTGAAGG
AGGCTTTCATGCTATCAGAAAAGCCCTTTGCACTAAACAAAATTGATGTTATCTCCTCTT
CTAGGCTCTAGAGAGGTCAGAAAAGGAAGAGCAAAGAATTACCAACAAGTCAGAACAGAC
AGCAGTGACCTATGGAAAAAAAGGAAAGGTTACGCGAGAAAGAATCACAGAACAGCACAT
ATTGAAAGAAAGGCAAGGATTCTAAATGATTCTGCAGATGTCTGTGGCCATTTGCCTGGA
TGCCAGCTTTCCACCCTGCGTGAGAATTCTTGGGAGCTCTAACCTACAGAAACCAGCTAA
AACTCTGTTTTACCGCTGAAGATTTATTACAAACTGAGCAGGACCAACCCACCCACCCAT
CAAACACCATTTTGTGTATTCTTGAGGCACCTCCTGGACATGAGCCTTTCTGCACATAAG
AGCCTCTTCGGAGGCCCCTCCACTTGCTGCACTTATTTCTGTGTTAGAACTTGGGTGATC
CTACCCCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTGGGCGAGGAAGAAAGCTTTTCAG
AAGGTGCATTAGAGTTCACAACAGTGCCCTCTGCTGTCCAAGTGGTGGCTGAGCTGAAGG
AGGCTTTCATGCTATCAGAAAAGCCCTTTGCACTAAACAAAATTGATGTTATCTCCTCTT
CTAGGCTCTAGAGAGGTCAGAAAAGGAAGAGCAAAGAATTACCAACAAGTCAGAACAGAC
AGCAGTGACCTATGGAAAAAAAGGAAAGGTTACGCGAGAAAGAATCACAGAACAGCACAT
ATTGAAAGAAAGGCAAGGATTCTAAATGATTCTGCAGATGTCTGTGGCCATTTGCCTGGA
TGCCAGCTTTCCACCCTGCGTGAGAATTCTTGGGAGCTCTAACCTACAGAAACCAGCTAA
AACTCTGTTTTACCGCTGAAGATTTATTACAAACTGAGCAGGACCAACCCACCCACCCAT
CAAACACCATTTTGTGTATTCTTGAGGCACCTCCTGGACATGAGCCTTTCTGCACATAAG
AGCCTCTTCGGAGGCCCCTCCACTTGCTGCACTTATTTCTGTGTTAGAACTTGGGTGATC
CTACCCCTCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-280, + strand, RNAz p=0.993482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-280, + strand, RNAz p=0.993482

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               45-253, ze59a12.s1 Soares retina N2b4HR Homo sapiens cDNA clone 
(gb|AA019300.1|), blast E-value=0, identity=94.76% 
               

               
               45-253, ze68b09.s1 Soares retina N2b4HR Homo sapiens cDNA clone 
(gb|AA021440.1|), blast E-value=0, identity=92.13% 
               

               
               103-253, RC4-CN0109-131200-011-d03 CN0109 Homo sapiens cDNA, mRNA sequence 
(gb|BF767603.1|), blast E-value=0, identity=95.36% 
               

               
               45-188, 603027948F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI757642.1|), 
blast E-value=0, identity=95.14% 
               

               
               45-253, UI-H-DF1-auk-e-14-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone 
(gb|BM991750.1|), blast E-value=0, identity=95.22% 
               

               
               45-205, yq50f07.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(gb|R95773.1|), blast E-value=0, identity=92.02%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               45-253, ze59a12.s1 Soares retina N2b4HR Homo sapiens cDNA clone 
(gb|AA019300.1|), blast E-value=0, identity=94.76% 
               

               
               45-253, ze68b09.s1 Soares retina N2b4HR Homo sapiens cDNA clone 
(gb|AA021440.1|), blast E-value=0, identity=92.13% 
               

               
               103-253, RC4-CN0109-131200-011-d03 CN0109 Homo sapiens cDNA, mRNA sequence 
(gb|BF767603.1|), blast E-value=0, identity=95.36% 
               

               
               45-188, 603027948F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI757642.1|), 
blast E-value=0, identity=95.14% 
               

               
               45-253, UI-H-DF1-auk-e-14-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone 
(gb|BM991750.1|), blast E-value=0, identity=95.22% 
               

               
               45-205, yq50f07.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(gb|R95773.1|), blast E-value=0, identity=92.02%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               45-611, gnl|bosTau2|chr9 (39326044-39326612)
               

               
               45-611, gnl|Hg17|chr6 (131235226-131235778)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-611, gnl|bosTau2|chr9 (39326044-39326612)
               

               
               45-611, gnl|Hg17|chr6 (131235226-131235778)

	45-253, ze59a12.s1 Soares retina N2b4HR Homo sapiens cDNA clone (gb\|AA019300.1\|), blast E-value=0, identity=94.76%
	45-253, ze68b09.s1 Soares retina N2b4HR Homo sapiens cDNA clone (gb\|AA021440.1\|), blast E-value=0, identity=92.13%
	103-253, RC4-CN0109-131200-011-d03 CN0109 Homo sapiens cDNA, mRNA sequence (gb\|BF767603.1\|), blast E-value=0, identity=95.36%
	45-188, 603027948F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb\|BI757642.1\|), blast E-value=0, identity=95.14%
	45-253, UI-H-DF1-auk-e-14-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone (gb\|BM991750.1\|), blast E-value=0, identity=95.22%
	45-205, yq50f07.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (gb\|R95773.1\|), blast E-value=0, identity=92.02%

	45-611, gnl\|bosTau2\|chr9 (39326044-39326612)
	45-611, gnl\|Hg17\|chr6 (131235226-131235778)